Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01977 ATGAGAAACCCATCTCCAACACCAACACCAACACCAACACCAACACCTACAACAACTACCAAGAACAAGAAAAGTAACAGCAACAACATTGCTAGTAGCAGCAATAACAACAACAATGGAAATAATACTCCATGTTGCAACAAGGTTGGGTTGAAGAGAGGCCCGTGGACTCCAGAAGAAGATGAAGTGTTGTCAAATTACATCAAGAAAGAAGGAGAAGGACGGTGGAGGACGCTGCCCAAGCGCGCAGGCCTTCTCCGGTGCGGCAAAAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCTCCGTCAAGCGCGGCCATATCGCTCCCGACGAGGAAGATCTTATCCTCCGCCTCCACCGCCTTCTCGGTAACAGGTGGTCTTTGATAGCTGGAAGGATTCCTGGAAGAACAGATAACGAAATAAAGAACTATTGGAACACCCATCTAAGCAAAAAGCTTATTAGCCAAGGGATTGATCCCAGAACTCACAAGCCTTTAAATCCAACACCATCAATTAATGTTATTCCTTCTTCTTCTTCCACTTTTCCATCTTCTAAACCTCCTTCTATGATCATCTCCAACCCTAATAACCCTTGCCATGATCTCACCAATATCGTTAACCAAGGTTTTCAATATCATCACCAACCTCCTGTTTTTAACAATAACATTCCATTACCCACTACCAATGATATTTCTGCAATGGGCTTCATGGACAATGATGATTGCAACGATGATATCAACATCAATTATTACTCAGACGATGTGTTTTCTTCCTTCCTCAACTCTTTGATCAATGATGATGCTTTTGCGGTGCAACAGCAGCACCACCACCACGTGCAAACAGAGCTTCACTCTGATCGTGTCGATGATCCTTTGTGTTCTATCACCACTGGTTCTGCACCACAGGGTTATGATAACAATGAATTTGGAGTTCTTTGGGAATCAACACTCGTGCCTGCTGCTACTTTCAGCCAAAACAACATTAACGACCACATCACAAAGCGAACTCATGAACACCACAATCATTAA 1035 0.4444 MRNPSPTPTPTPTPTPTTTTKNKKSNSNNIASSSNNNNNGNNTPCCNKVGLKRGPWTPEEDEVLSNYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPTPSINVIPSSSSTFPSSKPPSMIISNPNNPCHDLTNIVNQGFQYHHQPPVFNNNIPLPTTNDISAMGFMDNDDCNDDININYYSDDVFSSFLNSLINDDAFAVQQQHHHHVQTELHSDRVDDPLCSITTGSAPQGYDNNEFGVLWESTLVPAATFSQNNINDHITKRTHEHHNH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01977 344 MobiDBLite consensus disorder prediction 1 15 - -
Pste8g01977 344 SMART sant 105 153 IPR001005 -
Pste8g01977 344 SMART sant 52 102 IPR001005 -
Pste8g01977 344 ProSiteProfiles Myb-like domain profile. 48 100 IPR001005 -
Pste8g01977 344 MobiDBLite consensus disorder prediction 16 46 - -
Pste8g01977 344 CDD SANT 55 100 IPR001005 -
Pste8g01977 344 MobiDBLite consensus disorder prediction 1 46 - -
Pste8g01977 344 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 43 179 - -
Pste8g01977 344 FunFam transcription repressor MYB5-like 110 176 - -
Pste8g01977 344 Gene3D - 53 105 - -
Pste8g01977 344 SUPERFAMILY Homeodomain-like 50 147 IPR009057 -
Pste8g01977 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Pste8g01977 344 FunFam Myb transcription factor 50 106 - -
Pste8g01977 344 MobiDBLite consensus disorder prediction 168 189 - -
Pste8g01977 344 CDD SANT 111 151 IPR001005 -
Pste8g01977 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 100 IPR017930 -
Pste8g01977 344 MobiDBLite consensus disorder prediction 160 189 - -
Pste8g01977 344 Gene3D - 110 171 - -
Pste8g01977 344 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
Pste8g01977 344 Pfam Myb-like DNA-binding domain 111 151 IPR001005 -
Pste8g01977 344 Pfam Myb-like DNA-binding domain 53 100 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01977 Pste-Chr8 15530699 15531841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01977 43 268 MYB Transcription Factor Family AT3G13540 60.619 5.71e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste8g01977 Myb_DNA-binding 1.6e-13 CL0123