Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01970 CGCCACGACAAAATAAAAATGCCGCCTCCAGCGCTTAACTTGCCCCCCGGTTTCCGCTTCCACCCCACCGACGAAGAACTCGTCCTTCACTACCTCTGCCGCAAATGCGCCACGCAACAAATCGCAGTTCCCGTAATCGCTGAAATCGACTTATACAAGTTCGATCCCTGGGACCTCCCTGGAATGGCCTTGTACGGAGAGAAAGAATGGTATTTTTTCTCGCCCAGGGACCGCAAGTACCCGAACGGGACTCGCCCGAACCGCTCCGCCCGAACCGGCTACTGGAAAGCGACCGGAGCTGATAAACCGATTGGAAACCCGAGACCCGTTGGGATCAAGAAAGCGTTGGTTTTTTACTCTGGCAAAGCCCCCAAAGGAGATAAAACCAACTGGATCATGCACGAGTATCGTCTCGCACACGTGGATCGTTCCGCTCGCAAAAACAACACCTTGAGGTTAGATGACTGGGTGCTGTGCCGCATTTACAACAAGAAAGGCGCGGTTGAGAAGCAACAACCGCCGAGTGGGGTCCGCAAAATCGAACGGTCCGAACCGGAGGACGAGAAGCCCAGGATCGTGCCACGTGTCGAGGGGATTCTTCCACCGCAGGCGGTGGCGGACTGCGTGTACTTCGACGCTTCGGACTCGGTGCCGCGGCTGCACACGACGGACTCGAGCTGCTCCGAGCAGGTGGTGTCGCCGGAGTTGGCGAGCGAGGTGCAGAGCGAAATGAAGAGGGGCAACGAGTTTGCGTATAATTACTTGGATGCCACTCTCGGGAGCGGGAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTACAACTCCAAGCCGTTTTGAAATCATTCACCACCGCGACGACGACGACGTCGTTTCGTGTGTGCATGTATTTTTGCAGTGGCTGCATTGCACGGAAGCACGAGACTGTATCGAAGGTCCGTGAGTGTGCCCGTGCTGGTGCTCGTAGGGGATTAGTACCAAAACAAACATTCTTATATATATATATATATATATATGAACATCATGATGTTATTATAATGTGGTTATTAA 1056 0.5341 MPPPALNLPPGFRFHPTDEELVLHYLCRKCATQQIAVPVIAEIDLYKFDPWDLPGMALYGEKEWYFFSPRDRKYPNGTRPNRSARTGYWKATGADKPIGNPRPVGIKKALVFYSGKAPKGDKTNWIMHEYRLAHVDRSARKNNTLRLDDWVLCRIYNKKGAVEKQQPPSGVRKIERSEPEDEKPRIVPRVEGILPPQAVADCVYFDASDSVPRLHTTDSSCSEQVVSPELASEVQSEMKRGNEFAYNYLDATLGSGNQMSPLQDIFMYLYNSKPF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01970 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 218 - -
Pste8g01970 275 MobiDBLite consensus disorder prediction 164 184 - -
Pste8g01970 275 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Pste8g01970 275 FunFam NAC transcription factor 17 162 - -
Pste8g01970 275 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Pste8g01970 275 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Pste8g01970 275 MobiDBLite consensus disorder prediction 169 184 - -
Pste8g01970 275 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01970 Pste-Chr8 15325702 15327400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01970 6 269 NAC Transcription Factor Family AT1G01720 69.718 7.04e-141 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste8g01970 NAM 6.3e-39 No_clan