Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01961 TTTCAAGTTAAGTAATTAACAGGTTACAAAGATTGATTCTTTATATCTTCTCTGAACACTGAGATGGAGCTTGTGAAAAGCCAAAAGCTAGAACAGCAGCAGCAACAGCATTTTCATGTGTTGGTGGTAGATGATAGTGTCATAGATAGGAAGCTTTTGGAGAGGCTCCTAAGAGATTCTTCATGCAAAGCAGCTACCTTTGTGGATTCTGGAGACAAAGCTTTGAAATATCTTGGCCTGCTTGATGATGAACTTCATAATGCTTCGTCAACTTCTTCAGAATCATTGGAACAAAGCGGAATGAAAGTGAATATGATCATGACAGACTACTGCATGCCAGGAATGAGTGGCTATGATTTACTCAAACGAATCAAGGGATCTTCTTGGAAAGATGTACCAGTCGTCATCATGTCATCAGAAAACATACCATCTAGAATCACTATTGAACAAAAAAAATCTGCAGACAGATCAATGGCTTCTCACACTGCCAATAATAACGATACCCTTAATACAACTAAGGCACTGTGTCCCCAGCAATGGTTTAAATTTCAGTTTGTATCTACAATTATAACTACAATATTTCGATTTTGGAATTGGAAGTCTCTTGTGATATATGTTGGTGGAGTTTTAGGGTTTGTTAGCAATGTAGATGTTGAGAGAAGACTTTGTCTATTCTCAAACTTTAATTATGTGGTGAATTACTCAAAGGGTGAGTTTAAGGAGATTACTAATCACATGAACACACTAGAGATCACTAATTATGCGATTGCTAATAGGGGTGTTAGGAAGAAAGGGACAAAGAGTTTGATTATGGATTTGGACAACGTATTCCTCCATGTGGTAGAATTCATGGTTGAGACAAGAGGTGGATGCATTCAACCATCTATCGATAATGGTGAAGAAAATAATGTGTCCAAACACTTCAATATCCCAGCTCACAATGCTTACAGAAGTGATGCACATTGTGTGCTTGTTGTTGTGCAAGGGTACATATTAAGTTATACTCTAGTTGCTATTGAGAGGAAGGTTGCAAACTCTGTTAACTTGGCTTCTATGAGTAACCAAAATGACAAGTCAAAGACACAAGATGCCCTAAGTGATGAAGACAATACATTTGTTCCACCAAATGTGGAGGCTAATGCAAATATTGAAAATGACTATATGACTGAGGTGTTAGATAGTGATGATTCAGATTGTGATGAGGCAAAAGTAAAATATGAACGATACAACAAAGATCTTATGTGCAAACAGTTTAAGTGGATGTTGTGGATGAAAACAGCCATTGAACACAATGTTCTGATTGGCAAAGAGACAAAATTTTATTTCAATGATAAGAGAAAAGTGAAGGTGAGGTATAAGCATGACTGTGAATATCTTGTCCATGTTGGTAAAGTTGGGAGAAGTCATACATTTAGCCTTAATACCTAA 1428 0.3683 MELVKSQKLEQQQQQHFHVLVVDDSVIDRKLLERLLRDSSCKAATFVDSGDKALKYLGLLDDELHNASSTSSESLEQSGMKVNMIMTDYCMPGMSGYDLLKRIKGSSWKDVPVVIMSSENIPSRITIEQKKSADRSMASHTANNNDTLNTTKALCPQQWFKFQFVSTIITTIFRFWNWKSLVIYVGGVLGFVSNVDVERRLCLFSNFNYVVNYSKGEFKEITNHMNTLEITNYAIANRGVRKKGTKSLIMDLDNVFLHVVEFMVETRGGCIQPSIDNGEENNVSKHFNIPAHNAYRSDAHCVLVVVQGYILSYTLVAIERKVANSVNLASMSNQNDKSKTQDALSDEDNTFVPPNVEANANIENDYMTEVLDSDDSDCDEAKVKYERYNKDLMCKQFKWMLWMKTAIEHNVLIGKETKFYFNDKRKVKVRYKHDCEYLVHVGKVGRSHTFSLNT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01961 454 ProSiteProfiles Response regulatory domain profile. 18 154 IPR001789 GO:0000160
Pste8g01961 454 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 126 IPR045279 GO:0009736
Pste8g01961 454 SMART REC_2 17 141 IPR001789 GO:0000160
Pste8g01961 454 Pfam Response regulator receiver domain 19 120 IPR001789 GO:0000160
Pste8g01961 454 SUPERFAMILY CheY-like 17 123 IPR011006 -
Pste8g01961 454 Gene3D - 3 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01961 Pste-Chr8 15141715 15148078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01961 12 126 Response Regulator Gene Family AT2G41310 56.410 2.67e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste8g01961 Response_reg 3.2e-12 CL0304