Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01952 ATGAGAAACAATTTGGGCGAGATAATGTGGAGACAGAGAGCAATATTATTGGTGAGCCTGCTGTTTCAAGTGCTCCAAAATGTTGCTTCCAACAAGCATGTTTGTCCTCCTTCTTCATGTGGAAAAATCAGCAACATAAGCCATCCATTTCGATTAAAAGGCGACCCAAAACGTTGTGGCAACAGCAGGTATGAGCTGGTTTGTGAAGATAATGTTACGGTGTTGTATTTGTACTCTGCAAAATATCATGTGCAGGCAATCAACTATGATAACTTCACAATCCGAGTGATGGAACCGGGACTTATTCAACAACCCAATTGCTCCTCTCTTCCTCGCTTTTTCTTGTCTCAATCCAATTTCACCAATAACAAGGATCCATACCAACCCATGCAATATGGATCTTGGTTTCCAAGTAACTATTCTATGGAACATACTTTTCGGCACATAGTTTTCTTGAAATGTATAAACGCCGTAACTGACAACACAAAGTATGTGGATATTGCTTCATGCGACTCCAAAGGGTATACATACGCTGTTGCTGACTTGAAAGCAAAGGAGGTTGAAGTTGGTTGTCATGGAATGGTCGTTTCTCCCACATCTCTGTGGGATTTTCACACAAACACAAATAACTATTCAGACACTCTCATCTACAAAGCACTTGCCTACGGATTTGAGATTTCATGGATGGGATTTGCCTGTAAGGAACTTTGTGGAGGCTATACACACTGTTATTTCAACACTACTGCACAGAAGCTTCATTGCTACCCGGGCTGTTTCAACATACCTTGGTTAGACGGACCCAAATGTGGAATACGGGAACAACTGTTGGCTTGGGCAGGGATTATTATCACTGTTGCTATGTACGTTATCCTTGCGTCATGGGTATGCAAATATTTGTTTGGGGTGCCACTAATTATCGCATTTGCAATATACAAATGGCGGAAAAGACATGTGTCACTATACGAAGGTATTGAAAATTATTTAGAACAAAATAACTTGATGTCTATTAGATATTCGTACAAAGAAATAAAGAAGATGGGTGGAGGTTTCAAAGAAAAGTTGGGGGAAGGAGGATACGGTTCAGTGTTCAAGGGAAAGTTGCGTAGTGGGCCTACTGTGGCAATCAAAATGTTAAATAAATCAAAAGGTAATGGGCAAGACTTTATCAACGAAATTACAACCATTGGAAGAATACATCATCATAATATAGTACAATTAATTGGATTTTGTGTTGAAGGGTCAAAACGTTATCTTGTTTATGAATTTATGCCCAATGGATCTCTAGATAAGATTATTTTTTCAAAAGATGGGAGTGTACAGTTAAGCTATGACAAAATATATGATATCTCTATTGGAGTCGCTCGTGGGATTTCTTATCTCCATTATGGGTGTAAGATGAAAATTTTGCATTTTGATATTAAGCCCCACAACATTTTATTAGATGAAAATTTTATTCCAAAAATCTCTGATTTTGGATTGGCAAAACTATATCCAATAAATAATAGCATTGTCACAATGACACAAGTAAGAGGGACACGTGGATATATGGCTCCAGAATTGTTTTATAAAAATGTTGGAAGGATATCACATAAGGTTGATGTTTATAGCTTTGGAATGCTTTTGATGGAGATGACAAGTAAAAGGAAAAACCTAAATCCTCATGAAGAACGATTAAGCCAAATTTACTTTCCTTCTTGGATTTACGATCATCTTGAAGAAGAAAGAGATATAGAAACCGAAGATATTACTGATGAAGAAAAGAAAATAATAAAACAGATGATTATAGTTGCACTTTGGTGTATACAATTGAATCCAAATGATCGTCCATCAATGAACAAGGTGATAGAAATGCTTGAAGGAGACATTAAAAGTTTAAAAATACCTTCCAGACCTACTTTAACTCCACATGAATAAGTGATATGATAAAACAATATTGAGAGACTTCATTAGATTACATTTGTCCATGTAAATTACTCATATTTGCTCATTAAAGAATAATATTTAATATAAAGCAAGTGAGCCTTTATATAATTTCTGTTAGATATTAGTACAAATGAACTTTTATGTTATTTCTTTTTTGTTTTCCTTATCTATAAGGTTACTTTAGTCTTTTACTTCTAGACTTTATATCTCCA 2135 0.3555 MRNNLGEIMWRQRAILLVSLLFQVLQNVASNKHVCPPSSCGKISNISHPFRLKGDPKRCGNSRYELVCEDNVTVLYLYSAKYHVQAINYDNFTIRVMEPGLIQQPNCSSLPRFFLSQSNFTNNKDPYQPMQYGSWFPSNYSMEHTFRHIVFLKCINAVTDNTKYVDIASCDSKGYTYAVADLKAKEVEVGCHGMVVSPTSLWDFHTNTNNYSDTLIYKALAYGFEISWMGFACKELCGGYTHCYFNTTAQKLHCYPGCFNIPWLDGPKCGIREQLLAWAGIIITVAMYVILASWVCKYLFGVPLIIAFAIYKWRKRHVSLYEGIENYLEQNNLMSIRYSYKEIKKMGGGFKEKLGEGGYGSVFKGKLRSGPTVAIKMLNKSKGNGQDFINEITTIGRIHHHNIVQLIGFCVEGSKRYLVYEFMPNGSLDKIIFSKDGSVQLSYDKIYDISIGVARGISYLHYGCKMKILHFDIKPHNILLDENFIPKISDFGLAKLYPINNSIVTMTQVRGTRGYMAPELFYKNVGRISHKVDVYSFGMLLMEMTSKRKNLNPHEERLSQIYFPSWIYDHLEEERDIETEDITDEEKKIIKQMIIVALWCIQLNPNDRPSMNKVIEMLEGDIKSLKIPSRPTLTPHE 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01952 637 CDD STKc_IRAK 354 620 - -
Pste8g01952 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Pste8g01952 637 FunFam PR5-like receptor kinase 423 629 - -
Pste8g01952 637 Pfam Protein kinase domain 351 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g01952 637 SMART serkin_6 348 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g01952 637 Coils Coil 568 588 - -
Pste8g01952 637 Gene3D Phosphorylase Kinase; domain 1 324 422 - -
Pste8g01952 637 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Pste8g01952 637 Pfam Wall-associated receptor kinase galacturonan-binding 35 97 IPR025287 GO:0030247
Pste8g01952 637 Gene3D Transferase(Phosphotransferase) domain 1 423 627 - -
Pste8g01952 637 PANTHER RUST RESISTANCE KINASE LR10-RELATED 322 631 IPR045874 GO:0004672
Pste8g01952 637 FunFam serine/threonine-protein kinase PBS1-like 319 422 - -
Pste8g01952 637 ProSiteProfiles Protein kinase domain profile. 348 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste8g01952 637 SUPERFAMILY Protein kinase-like (PK-like) 334 619 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01952 Pste-Chr8 15016972 15019606 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01952 24 633 Receptor kinase-like Gene Family AT5G38260 34.380 2.08e-112 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pste8g01952 Pkinase 8.1e-53 CL0016