Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01944 TCCGAGAAACAGCAAAAGAATGAAATCAACTGTTTTGTTGAACCCGTTAAGGGCTTAAAAGCCAGATTGGCTGTTTCTTCTACGAACTTTCCAGAACACAACTATCTCTTTCACTTTAAACTTAAACTATGACCATTTTCTTTTTCTTTTTCTTTTTCTAGCTTCCTTTCTTCATTCCATTGTTTCTGGTATATCGTATGGCTCACAATCACATCGCCACCGATTCACCTCTCTCTCGTCGCATAGTTCGTTCCTTCCTCCATTTCCTCAACTCAGTTGAACCGGGTCCTGGGGTAGATGCTGAAGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCTTTTAAGCTTAATTCATCTCCTGTGGCTGGTGATGATGTGAAATCTGATTCATTGATTGATATATTCAAGTCTCTTGAAGCTAGTAAGCAAAGTGAAACTAGTAAGCCAGATGTTGGTCCTCCCCCGGATTCCCCGGCTGCTTCCAGTTCATTCTCCGGTGAGAATCCTGCTCATTCGAAGAATCATTCTGAGGCGTCGAAATCTACGGATGAAGATTCAACACATGGCCCAGTTATTTTTGGATCTAAAGATGAACTCTGTGGACAGTTCTTTGCTGCTCTGGAGAAAACTCACTTTTTTGGGACCAATACTGATGGAAGTGATGACCCAGTGCAACTGGAGAAAGCATGTTGTTTGTTCGATGAGGCTTTTGTGGAGATGGAAAGATCTGGTAGTTACCAGCTTAGCTTGAAGAATTTGGCTGAATCACTAAAATCACTAGGTAACAAGGCAATGCAATCTAAGAAATACTCCGATGCAGTTGAGTTGTATAATTGTGCCATTTCACTTCATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATACAGAAGCAATCCAAGATTGTCTTAGATCTATTGAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTAGCCTTGCAGTTGGATCCAAATAATGAGTCTGTCAAAGAAAATATACGGGTGGCAGAGCATAAGTTGTTAGAAGAGCTACACCGAGCATATCAGAATCAGAATTCAAGACCATCTCAAGAATTTCCAAACCAATCTGCAAGAGGAGGATCAAGAAGCCATGGGGTGCCACCTCCATTTTCGTCTATGCCATTTAACCCCAACGATATTGCAAGCATGTTCATGAACATGGCCTCAAATGCTACAAATGCATATCAGGGATCACATTCTCAGGAAAGGCAAGAAGATAGCAACAGTAGTGGAGCTAGTGAACCTGAAATAAGAATTGGGGGAAACATCAGTGTAAACATGGAGCAAATACCAGAGGATCTAACAGGGGCCTTTCAATCTATGATGGAAATGTTATCTGGGGCTGTACCCCCCAGCCAATCACAAGATCAAATGAATGGAAGAACAGCTCCAAACTAAGCTTTTTCAGCATTCTGAGACTGTAAAGACTCAAAAACTGTGAAATAATTTTTTGCTTATTTAAATTTTTTTAACATTTTTCTGCATTAACTAACAAAGTTCTCTCAGTCTTTACATCATATAGAGCTTTTGAGGCACTATCCTTTTGGAATATCCACAATTCTATATGGATTGGGACGTGTAATTTACTAAAAGGGCGTAGTGTTGTAGCCAAGTTTAGATGATTATTGTTGCGGAGATGTGATTTCTTTCTTCGTCTCATCTGGTG 1719 0.4066 MAHNHIATDSPLSRRIVRSFLHFLNSVEPGPGVDAEGIEVARECLAEAFKLNSSPVAGDDVKSDSLIDIFKSLEASKQSETSKPDVGPPPDSPAASSSFSGENPAHSKNHSEASKSTDEDSTHGPVIFGSKDELCGQFFAALEKTHFFGTNTDGSDDPVQLEKACCLFDEAFVEMERSGSYQLSLKNLAESLKSLGNKAMQSKKYSDAVELYNCAISLHEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKAYSRLALQLDPNNESVKENIRVAEHKLLEELHRAYQNQNSRPSQEFPNQSARGGSRSHGVPPPFSSMPFNPNDIASMFMNMASNATNAYQGSHSQERQEDSNSSGASEPEIRIGGNISVNMEQIPEDLTGAFQSMMEMLSGAVPPSQSQDQMNGRTAPN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01944 417 Pfam Tetratricopeptide repeat 223 256 IPR001440 GO:0005515
Pste8g01944 417 SUPERFAMILY TPR-like 188 281 IPR011990 GO:0005515
Pste8g01944 417 SMART tpr_5 223 256 IPR019734 GO:0005515
Pste8g01944 417 SMART tpr_5 189 222 IPR019734 GO:0005515
Pste8g01944 417 MobiDBLite consensus disorder prediction 93 107 - -
Pste8g01944 417 MobiDBLite consensus disorder prediction 77 123 - -
Pste8g01944 417 MobiDBLite consensus disorder prediction 294 313 - -
Pste8g01944 417 PANTHER LD24721P 264 400 IPR047150 -
Pste8g01944 417 MobiDBLite consensus disorder prediction 396 417 - -
Pste8g01944 417 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Pste8g01944 417 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Pste8g01944 417 MobiDBLite consensus disorder prediction 346 375 - -
Pste8g01944 417 MobiDBLite consensus disorder prediction 294 329 - -
Pste8g01944 417 FunFam Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 76 - -
Pste8g01944 417 Pfam Homodimerisation domain of SGTA 14 71 IPR032374 -
Pste8g01944 417 MobiDBLite consensus disorder prediction 346 367 - -
Pste8g01944 417 MobiDBLite consensus disorder prediction 398 417 - -
Pste8g01944 417 Gene3D Tetratricopeptide repeat domain 184 325 IPR011990 GO:0005515
Pste8g01944 417 Gene3D Immunoglobulin FC, subunit C 1 76 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01944 188 272 U-box Gene Family AT3G07370 30.588 1.00e-06 48.1