Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01895 AAAAATATAAACAAACCCTAGTCGATTCTCTCTTTCTCACAGCTAGTCCAATCCGATTCTCGCGTCCTCATGCCTCCGCCGCAGCCTCGCCGCGTCGACCCCAAAATCTGGCGGGCTTGCGCCGGCGCCGCCGTCCACATCCCCAAGCTCCATTCTAGGGTTTACTACTTCCCCCAGGGCCACATGGAACAAGCCTCTTCCTCACACTATTCACTTTCCCCTCTGCTACGTTCCCTTCCCCTTGTTCCCTGCCACGTGTCATCCATCGATTTGCTCGCCGATCCTTTCTCCGACGAGGTCTTCGCTAAGCTTCTTCTCACTCCTGTACTCAGCGCTTTTCAGCAAAACGACAACCGCAGCGGAGAAAACGACCACGAGAAGGAAACTGAAAACGGCGTCGTTTCCTTCTCCAAGATCCTCACCCCTTCCGACGCCAACAACGGCGGCGGTTTCTCCGTGCCGCGCTTCTGCGCCGACTCTGTCTTCCCTCCGCTCAATTTCCGCGCCGATCCGCCCGTCCAGCTCCTCTCCGTCACCGACGTCCACGGCGTCGCGTGGCGCTTCCGCCACATCTACCGCGGCACGCCGCGCCGCCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCGTCGCCGGCGACTCCGTCGTCTTCGTCAAGGACTCCGACGGCAACGTCTCCGTCGGGATCCGCCGCGCTGCGAGGTTCGCGGCCGCGAACTCTCTCCTCGAGGCGGATCCTCCGGCCGCGGCGCCGGGGGAGGGGTTTTCGCGGTGCACCGCGGGAAGAGTGACGGCGAAGGAGGTGGCGGCGGCGGCCGAGTCGGCGTCGCGGAACGTGCCGTTTGAGGTTGTGTATTATCCGAGGGTTGGTTTTGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGAAGCGATGAAGTGCGCGTGGGTTAGTGGAATGAGAGTGAAGATAGGATTGGAGACCGAAGATTCTTCCAGAATGACGTGGTTTCAAGGGACGGTGTCTTCTGCAAGTAACTCTGATAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGTCCTTGGCAGGTTGAACCTGCTTCGCCCACACTTGCATTTCATACAGTATTTTCCCCTACTACAAAAAGGTTTAGAGATGACCAGGATTCTGGGCTGTTAAGTGATAGGGAGGGAGACCCCTTCTTTCCTATGACAGGATTCCCTAACTCAACAATGGGATACATGAATAAAACATTGTTGAGTTATGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCTAGTTTTCCCAACCTTTTAAATGATAACACTTATCTGTATATGGGCCATGGCTCCTTCGGGAGCAATACAGTGCAAAGTGTGAGTACTGTGTCAACAGAGCTAAACATTAGCAGTTCTCAATCAGATGACTTGTCACCACAGAGCCAAAGTAGTTTTCATTCCTTTGACACAGAGTTTACTGGGACCCGTAACTCCAACACGAAAATTGGTTCTGGTTCATTTGTGCTATTTGGTAAGATCATACAGCCTGCTGAAAGTGATGTGCATGATGCTGATTGCATGGAACACGATGGCTGCAGGGGCAGCAAAGAAAATAAAGATAGTTGAGGCATGCTATTTGTGAAAGTAGTCAACGCAGCATATAAATACTTGTACAGGTATGCTAATAGATCTGATTGAATTTTTGTCACTAATTCAATGATAGAACCAGCTATTGGTGTTTCTTAGACGAAGTTTGTATTCAAGAAATGGATTATTTGTCTCTGCCTTTCATTCAACTGTCTCAAATCCAAGTTCAATGTACACCATAATTTATGATGGAGGGGTAGTTCTGACTTCTGACTAAGTTCTAGGTAATTTGATTCCTTGTATATTCTTAAAAGTGGATTTATTGATAACATAGATCTTATATTTCCCACTAATTGTGTGATATATTTGCAATAGTAAAAGTTTTGATTGACTTCAATTAATATATATTTTTTGTCTAGCTTACCCAG 2066 0.4956 MPPPQPRRVDPKIWRACAGAAVHIPKLHSRVYYFPQGHMEQASSSHYSLSPLLRSLPLVPCHVSSIDLLADPFSDEVFAKLLLTPVLSAFQQNDNRSGENDHEKETENGVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLNFRADPPVQLLSVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDSVVFVKDSDGNVSVGIRRAARFAAANSLLEADPPAAAPGEGFSRCTAGRVTAKEVAAAAESASRNVPFEVVYYPRVGFADFVVSAEVVEEAMKCAWVSGMRVKIGLETEDSSRMTWFQGTVSSASNSDNGPWRMLQVNWDEPEVLQNAKRVSPWQVEPASPTLAFHTVFSPTTKRFRDDQDSGLLSDREGDPFFPMTGFPNSTMGYMNKTLLSYDTFPAGMQGARHDLFSASSFPNLLNDNTYLYMGHGSFGSNTVQSVSTVSTELNISSSQSDDLSPQSQSSFHSFDTEFTGTRNSNTKIGSGSFVLFGKIIQPAESDVHDADCMEHDGCRGSKENKDS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01895 535 Gene3D - 291 358 - -
Pste8g01895 535 FunFam Auxin response factor 111 215 - -
Pste8g01895 535 CDD B3_DNA 112 207 IPR003340 GO:0003677
Pste8g01895 535 Pfam Auxin response factor 253 328 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste8g01895 535 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 509 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste8g01895 535 SMART B3_2 113 215 IPR003340 GO:0003677
Pste8g01895 535 Pfam B3 DNA binding domain 113 214 IPR003340 GO:0003677
Pste8g01895 535 Gene3D - 110 215 IPR015300 -
Pste8g01895 535 MobiDBLite consensus disorder prediction 464 484 - -
Pste8g01895 535 SUPERFAMILY DNA-binding pseudobarrel domain 105 218 IPR015300 -
Pste8g01895 535 ProSiteProfiles B3 DNA-binding domain profile. 113 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01895 Pste-Chr8 13980922 13984153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01895 7 533 B3 DNA Binding Superfamily AT1G77850 47.007 1.26e-158 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste8g01895 B3 1.6e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01895 8 13980922 13984153 Pste8g01895 8 13980922 13984153 ECH
Pste8g01895 8 13980922 13984153 Pste2g02907 2 29084699 29089081 PCT