Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01865 ATGGCAGCTATGATGGATTTGTACAAGGGACTACAAAATCAGTCAGATCCACTAAGAGGTGAGCTTATGGAAGTTCTAGAACCTTTTATGAAAAGTCCTTCCTTAACTCCTTCTTTATCTTCTTCTGATTCACCCTTACCTTCTACTTCATATTCTCCTTCACCTTTGTATTTCCCTTCCCCTTCACTACCTCCACACCCCAATTACCTGTTTCAAACCCAAAGCTTAATAGGCTTCGAGCAACCCAATTCTCTTCTCGGGCTCAACCACCTAAGTCAGTCTCAAATTTCTCAGATCCAGGCCCAGATCGAGGCCCAGAACCAGAACTCTCTTTCTCTGAGTTTTCTGGGCCCGAAGCCCGTTCCGATGAAACAAGTGGGTGTGCCACCTAAGCCCACGAAGCTCTACCGAGGCGTGAGGCAGAGGCATTGGGGAAAGTGGGTAGCCGAGATCAGACTCCCGAAGAACCGAACCAGGCTTTGGCTCGGAACTTTCGACACTGCCGAGGAAGCAGCTTTGGCGTACGACAAAGCCGCGTACAGACTCCGAGGCGACTTCGCCAGGCTCAACTTCCCCAACCTGAAAGGCTCGTGCATCGGCGAGTACAAGCCTCTGCAGTCCGCGGTTGACGCCAAGCTCGACGCCATTTGTCAGAGCCTCGCGGAAATGCCGAAGCAGGGGAAGGCCGAGAAGAGTGCCAGGTCAACCAAGAAGTCGAAGCAAGGTCCTAAGGAGACACCGAACCAGGACCCCAACCCCAACCCAAACCCGAACCTGAACCTGAACCCGAAGGCCGAACCTTGTGCTGCTCTGTCGCCTGAAAGCGAAGGTTCCGCGGATTCTTCTCCGCTCTCTGATCTCACCTTTGATATCACCGAGCCCCAATGGGAGGACGCTTCCGCACATTTTAATTTGCAGAAGTTTCCTTCTTATGAAATCGATTGGGATTCTCTTTGA 957 0.5183 MAAMMDLYKGLQNQSDPLRGELMEVLEPFMKSPSLTPSLSSSDSPLPSTSYSPSPLYFPSPSLPPHPNYLFQTQSLIGFEQPNSLLGLNHLSQSQISQIQAQIEAQNQNSLSLSFLGPKPVPMKQVGVPPKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYRLRGDFARLNFPNLKGSCIGEYKPLQSAVDAKLDAICQSLAEMPKQGKAEKSARSTKKSKQGPKETPNQDPNPNPNPNLNLNPKAEPCAALSPESEGSADSSPLSDLTFDITEPQWEDASAHFNLQKFPSYEIDWDSL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01865 318 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Pste8g01865 318 Gene3D AP2/ERF domain 135 193 IPR036955 GO:0003700|GO:0006355
Pste8g01865 318 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 6 318 - -
Pste8g01865 318 MobiDBLite consensus disorder prediction 224 293 - -
Pste8g01865 318 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
Pste8g01865 318 MobiDBLite consensus disorder prediction 227 244 - -
Pste8g01865 318 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Pste8g01865 318 MobiDBLite consensus disorder prediction 33 51 - -
Pste8g01865 318 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Pste8g01865 318 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Pste8g01865 318 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
Pste8g01865 318 MobiDBLite consensus disorder prediction 33 53 - -
Pste8g01865 318 FunFam Ethylene-responsive transcription factor 2 134 193 - -
Pste8g01865 318 MobiDBLite consensus disorder prediction 275 289 - -
Pste8g01865 318 CDD AP2 134 194 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01865 Pste-Chr8 13465647 13466603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01865 1 318 AP2-EREBP Transcription Factor Family AT1G78080 50.700 1.08e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste8g01865 AP2 1.2e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01865 8 13465647 13466603 Pste2g02823 2 28275934 28276935 PCT