Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01841 AGAAGAGAAGGACAAGGAAATAAGACTAGTTTAAGTCAAAACGGAAAATTGATTGGATGGTGGGAGAGTATATTAATGCAGAGACAGAGGGGAAACACTTCAAAAAGCCCACACCCCTTCTCCCTTCTTTCTTTGGCCAGCAAATTAGAGTTTGCAGCTGTCAGATCCTCTTCTCTCTCCTCCACCACCACCCTTTTTCTCACTCCCTTTTCCTTTTCTCTTACAATAATAATATTTTTATAAAACAACCACTTTTATTTTCCTTTTCATTTTTTTTTTTAATTAACCAACTTCTCTGTCACAAACAACCATCAAATAATAACGATACCACACCATCATAAACCATACCCACCACCACCCTTTTCTCTTAACCTCTCTTCAAATTCAATGATTTTTCTGTCGTGAGAAGAAGAAGAATAAGAAGAGAGGTGTTGTTGAATGGTGGGGTAGGCACACGGCACGCTCACACAGAGAGAGAACAGAAACCAGAAGAAGAAATGGCAGAGACAAGTCAATGACTAGAGATCAGAAGAAACAAAGAACACCCTTTTGAGCTTAACTAGCTTTCATGCATAAACAAGGACACCCTTTTCTTTCTTCGACACCATGGCTTATCCACATTACCGATCACAGTTTGGAGACACAACGTTCACTAAGGTCTTTGTTGGAGGCCTAGCTTGGGAGACTCCAACAGAAGAAATGCGCAAATATTTTGAACAGTTTGGCGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCCAGAAGGGCATGTGCTGATCCAAACCCAGTTATAGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGACCAAGACCATCACCACCTAGAGGAAGAGGTACATTCCAAGGAGTAGCGGCGGGAGCGACGTCGTACAGCGGAGTGGCGGCGGGAGGAGCGCCTGCACTGGCACCACCGCCGCCACCACCGCCGCCGCTGGTGTACCCGCCATATGGCTACCCTACCTACACCCCTGATTACGGGTACCACCAAGCCACAATGTATAACCCCCAAATTCAGCAACCACAATACTATCAACAACTCTATGGACCATCATCTTCCACCATGGGTTCCCCTTATTACTATGGCTATTCTATGCAAGCACCAAGAGGCACATTTTCTACAGCCCAACCACATCGCATACCAGCTGGACCCTCCTATCTATACTACCCTACACCCATGGAACCCTCTTTCTCTGCATATCGTCCACCACCTCAATTGCAACAACTACCAATAAGGCATCCCCCTCCTTCCCCTAGTGATTCACAGACTCAGCAGCGTGCCTCCTCCGAGACAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACTCAAGGGAGGAACTGATAAATATATATACCTGCTAAGTTTCAACTGTATAATCTTCAAATTAAATTTTATCACATTAATTCTTGATCTTTTTCCACATCATATCTTCATTTTTTTGGTCCACATGCTGTAGCTTTTAGGCAATAATGGTTCTCATCAGATTAGTTGTGTTCCCCACAGCTATGGCATTCAAAAGTTGGAC 1615 0.4353 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGVAAGATSYSGVAAGGAPALAPPPPPPPPLVYPPYGYPTYTPDYGYHQATMYNPQIQQPQYYQQLYGPSSSTMGSPYYYGYSMQAPRGTFSTAQPHRIPAGPSYLYYPTPMEPSFSAYRPPPQLQQLPIRHPPPSPSDSQTQQRASSETAGGVVITSESSNTQGRN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01841 274 Gene3D - 3 110 IPR012677 -
Pste8g01841 274 MobiDBLite consensus disorder prediction 244 274 - -
Pste8g01841 274 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Pste8g01841 274 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Pste8g01841 274 SUPERFAMILY RNA-binding domain, RBD 9 114 IPR035979 GO:0003676
Pste8g01841 274 PANTHER BOULE-RELATED 6 253 - -
Pste8g01841 274 SMART rrm1_1 17 89 IPR000504 GO:0003723
Pste8g01841 274 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Pste8g01841 274 MobiDBLite consensus disorder prediction 223 274 - -
Pste8g01841 274 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01841 Pste-Chr8 13085275 13090598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01841 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 4.85e-15 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01841 8 13085275 13090598 Pste8g01841 8 13085275 13090598 ECH
Pste8g01841 8 13085275 13090598 Pste2g02704 2 27257973 27262477 PCT