LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g01834	CCAAACCCAAACTATCTAAGATTTATGTTGGAGTCAAAGGGTGGCTTGCGTCTTTGTTAAGACTTCGAGGACATTTTCACAACCCCGATAAGGCGAGAACCTGCTTTTTTGTCTCGTATGAATACGACATTCACTTTCACTTCTTCTTTTCATTCCTTTTATGTCAAAAAAACACAACACACACACATACAAGGTATGTAGTAGAATTGCATTGAAATTTAGCAACAGTGTAAACTATGGAGCGCTATGATATTATCAAAGATATTGGGTCTGGGAATTTCGCTGTGGCCAAGCTGGTTAGGGACAACTTCACCAATGAGCTTTTTGCTGTCAAGTTCATTGAGAGAGGCCACAAGATTGATGAGCATGTCCAGAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATTGTTAGATTCAAAGAGGTCTTGCTGACACCAACTCATCTAGCCATAGTAATGGAGTATGCTTCTGGAGGAGAACTCTTTGAGAGGATATGCAATGCCGGTAGATTCAGTGAGGATGAGAATCTTCGGTCCTCAAATGTTGTTACTTTTCATCAGGCAAGATTTTTCTTTCAGCAATTGATATCAGGAGTCAGTTACTGTCATTCAATGCAAATTTGTCACAGAGATCTGAAGCTTGAAAACACACTATTAGATGGAAGCACTGCACCACGAGTTAAAATTTGTGACTTTGGCTACTCAAAGTCATCGGTATTGCATTCACAACCTAAGTCTACGGTAGGAACTCCTGCTTACATTGCACCTGAGGTTCTTACAAAGAAAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTCACCTTATACGTCATGTTAGTTGGGGCTTATCCTTTTGAAGACCCTGCAGATCCAAGAAACTTCAAAAAGACCATTGGTAAGATACTTAGTGTCCAGTATTCAGTCCCAGATTATGTACGAGTTTCCATGGAATGTAGGCATCTTCTATCACAAATATTTGTGGCAAGTCCAGAAAAGAGAATAACAATACCAGAAATTAAAAACCATTCATGGTTTTTAAGGAACTTGCCCATAGAACTAATGGAAGGTGGAAGCTGGCAAATAAATGATGTAAATAATCCGTCACAAAGTGTTGAGGAAGTCCTGTCTATAATTCAAGAGGCAAGAAAATCTCTTAATGTTCCCAAGATTGGTAGCCTTCTTCCTGGGGTAAGCATGGACCTGGATGACATGGATGATGATGAAGACCTTGAAGACGTAGAAACAAGTGGTGAATTTGTGTGCCCTCTTTAAATGTGTACATGAACTAGCAGAGTTATTATTTGCTGTGAAAATGTGAATAGTTTTTTCCGTGGGGGCTAAAATTCCTTGGTGGTTAATTTTTCATTTAAGATCAGTAGTCCCACTTGTATTGAATGCCTAGTTATTTCTTAGTTTTGACAATTTTAGGGGTTTTCCTTCTGTTGATTTTATTCTCTCCCCATCATGCGTTTATACTGTTGATGTCATAAAATATAGGAATTTCCAAATCCATGTGCCATTTTCCTAGAGATGTAGCATCACATGTTCCAAAGATGAGAATATTAAATAAAGCAAGTAAGTTGTGGCA	1605	0.3857	MERYDIIKDIGSGNFAVAKLVRDNFTNELFAVKFIERGHKIDEHVQREIMNHRSLKHPNIVRFKEVLLTPTHLAIVMEYASGGELFERICNAGRFSEDENLRSSNVVTFHQARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPADPRNFKKTIGKILSVQYSVPDYVRVSMECRHLLSQIFVASPEKRITIPEIKNHSWFLRNLPIELMEGGSWQINDVNNPSQSVEEVLSIIQEARKSLNVPKIGSLLPGVSMDLDDMDDDEDLEDVETSGEFVCPL	350

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g01834	350	Gene3D	Phosphorylase Kinase; domain 1	1	79	-	-
	Pste8g01834	350	Pfam	Protein kinase domain	4	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste8g01834	350	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	131	143	IPR008271	GO:0004672\|GO:0006468
	Pste8g01834	350	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Pste8g01834	350	CDD	STKc_SnRK2	3	271	-	-
	Pste8g01834	350	ProSiteProfiles	Protein kinase domain profile.	4	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste8g01834	350	Gene3D	Transferase(Phosphotransferase) domain 1	80	278	-	-
	Pste8g01834	350	FunFam	Serine/threonine-protein kinase SAPK2	1	79	-	-
	Pste8g01834	350	SUPERFAMILY	Protein kinase-like (PK-like)	2	283	IPR011009	-
	Pste8g01834	350	FunFam	Serine/threonine-protein kinase SRK2E	80	280	-	-
	Pste8g01834	350	PANTHER	SERINE/THREONINE KINASE	2	291	-	-
	Pste8g01834	350	SMART	serkin_6	4	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g01834	Pste-Chr8	12952950	12956515	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g01834	3	291	CBL-interacting serine-threonine protein kinases	AT4G24400	39.597	1.09e-64	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_OST1L	Pste8g01834		Pkinase	1.3e-67	CL0016