Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01823 ATGGCCAGCAAACACAGAAAACTCTTCCTTGATGAAAATACCAAAAACCAAACCCGAGATTGCTATGGCTTTTGTGACCCTGCATGCCCTTACACCTGTTATTCTAACCCTGATTACTTTTTCTCTCCACCACCACCATCTATTTCACATTCCAGTTCAACACAAGTTAACCACATCTCTTCCTACTTGATCATCCTTGTTACACTTTTCGGGGTCATTTTTCTTGTGATTGGTTTCTACGTGATAAAAGTGAAGTGCTATGCTGCATGGTGTGGTTGGAGATTGAATGGTTCTGTTCCCTCTCAATCAGACACCACCGCTGAGGAGTTTCTCAATGAGAACCAAGTTGATCACCCCGTGTGGCTCATTGCCACTGTGGGGTTGCAACAATCGATTATCAACTCCATTACGGTGTGCAAGTACAAAAAGAATGAAGGGTTGGTTGAAGGAACCGAATGTTCAGTGTGTTTGAATGAGTTCCAAGAAGAAGAGACTCTGAGACTCTTGCCAAAGTGTAACCATGCTTTTCATATTCCTTGTATTGACACATGGTTGAGATCACACACAAATTGTCCTCTTTGCCGTGCGGTTATTGTGTCTAGTAGTGTCAATTCTGAAGCACCCGTGTCAAATTTTGAGCAAGAAAATGCAAATTTGGGGGGAAATCAAGAGACCCTTTTCGAGAATTTAAGGAATGAAGGGAGGTTAAGCAGCAACCTGGTAGCAGGGGAATCAAGTGAAGCACTGGAAGAAGCAAATTCTAAAGATAGGGTAAATGATCAAACTCATAATAATCAGGTTCTGGATATTATTGAGATTCAGACAGAGATGGGGTCTGTTTCAACTACAGAATCTGAAAGCCATCATGTAGTTGATGATCATAAACATGATGACACAATTAATCTGTGGAAGCAACAAGAGCAAGGTTGTGATTACTTCTCAAAAACGTGTAAAACAATGCGTCGTTCCTCTATAGAAGAATGTTTGCATTTAAGCCCGGTTTCTATGAAAAGGTCATTCTCCTGCAATGGAAGGGTTCTAACTTCGAGAGGTTACATGAGTCTTAACTCTAAACTCCTTCCGTCATTACTAGAATTTCAATCTATTAGAGAAGTACATAGTGTGCCGTGA 1131 0.4094 MASKHRKLFLDENTKNQTRDCYGFCDPACPYTCYSNPDYFFSPPPPSISHSSSTQVNHISSYLIILVTLFGVIFLVIGFYVIKVKCYAAWCGWRLNGSVPSQSDTTAEEFLNENQVDHPVWLIATVGLQQSIINSITVCKYKKNEGLVEGTECSVCLNEFQEEETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRAVIVSSSVNSEAPVSNFEQENANLGGNQETLFENLRNEGRLSSNLVAGESSEALEEANSKDRVNDQTHNNQVLDIIEIQTEMGSVSTTESESHHVVDDHKHDDTINLWKQQEQGCDYFSKTCKTMRRSSIEECLHLSPVSMKRSFSCNGRVLTSRGYMSLNSKLLPSLLEFQSIREVHSVP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01823 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Pste8g01823 376 FunFam RING-H2 finger protein ATL54 128 201 - -
Pste8g01823 376 SMART ring_2 153 194 IPR001841 -
Pste8g01823 376 Pfam Ring finger domain 152 195 IPR001841 -
Pste8g01823 376 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Pste8g01823 376 PANTHER RING-H2 FINGER PROTEIN ATL16 45 343 IPR044600 GO:0016567|GO:0016740
Pste8g01823 376 SUPERFAMILY RING/U-box 144 201 - -
Pste8g01823 376 CDD RING-H2_EL5-like 152 195 - -
Pste8g01823 376 SMART FANCL_C_2 149 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01823 Pste-Chr8 12788727 12789857 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01823 4 205 C3H Transcription Factor Family AT1G72220 47.162 2.93e-60 198
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01823 8 12788727 12789857 Pste8g01823 8 12788727 12789857 ECH