Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01822 TTAACAAATTGGCAAGAGAATCTTTCTGTGTGTTTCCCGGTGGTTAAGTTCGTGCGATCAAGGAACTGGTCTAAGACGAAAAACCTCACGTGCATAGGGCTGTAGCTTTTTGTTTGTGTGAGCAATCCACTTTAGAGATTTGAAGGCAAAAGGGCATTGTTCTTAAGGTGATGCCGATAAAAGGGTTACTTTGTTTGCTCTATTAGTGCCCCTGCTTTGGCCTTTGCTAAAGTAAAGTACCTTCCTTTCTTCGCCCAAAACTGTTTTTAGTATCTAATCATTATCCTTCATCTTCCGTGCTTTCCCATAACTGTTCTTTCCATCATCTAATCATTAACCTCAAAATCTAAAACTCTCTTATACAACCACCTCTCTCTCCTTTTCTCTTTCACACCTTTTATCTCTTTATCTCTGCTTTCTCCTCTTGTGATCAAAGAAACTTGTGTCTGTGTCTCCTTTGAGAGCTACACTTCCACTTCCACTTCCCCACTTGAACAATTTCAACTTTTTCCAACAAGTGACAAAAAATAATGGCCCTAGAGGCCGTGGTTTTTCCACAAGATCCATTCACTTACGGTTGCAACAACAAAGACTACTTGTACTCTTTAGTAGGAGGAGGAAGCCACGAATACCCAGAAGAAAAAGCCCTTGTGGGAATCATCAACAACAACATAGACCACACTCTGCATGCAAATTGGGATTCTTCTTCTCCTTCAGTTTTGCAAAATGTCAAAGACCAATGGGATTCTCACTCCTCCCCTGAAGTCTGCACGGTTGATCAATCTCTTCCGGGAGCTTTCCCTCCTCCTCCTCCCTCCACAGAAGCCACCACGGGCCGCCGCAAACGACGCCGTACCAAGAGCGCTAAGAACAAGGAGGAGATCGAGAACCAGAGGATGACCCACATTGCAGTTGAGCGCAATAGAAGGAAACAGATGAACGAGTACCTCGCTGTGCTTAGATCCTTGATGCCTCCTTCTTATGTACAAAGGGGAGATCAAGCCTCTATTATTGGTGGCGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGCCAAAAGAGAACAAAGGAGGAAGGGCAATTTTCTGAGCCATCACCCTTTGCTGAGTTCTTCATGTTCCCGCAGTACTCGACACGTGCAACACAGAGCAGCAGAGGCTATCCTAGCACGTGCGAGGCACGGAACCATTCATGGGCCGTAGCGGACATAGAAGTGACCTTGGTGGATGGCCATGCCAACATAAAGATACTCTCAAATAAACGACCAGGTTTGCTTTTGAAGATGGTTGTTGGCCTTCAAAGTCTTGCCTTAAGCATTCTCCATCTTAATGTTACCACTGTTGACGATATGGTCCTTACCTCAGTCAGTGTAAAGGTAGAGGAAGGGTGTCAGCTGAACACGGTGGATGAAATTGCAGCAGCAGTGCATCAATTATCACGCACGGTTCAGGAGGAAGTTGTTTTCAGCTAA 1487 0.4533 MALEAVVFPQDPFTYGCNNKDYLYSLVGGGSHEYPEEKALVGIINNNIDHTLHANWDSSSPSVLQNVKDQWDSHSSPEVCTVDQSLPGAFPPPPPSTEATTGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQKRTKEEGQFSEPSPFAEFFMFPQYSTRATQSSRGYPSTCEARNHSWAVADIEVTLVDGHANIKILSNKRPGLLLKMVVGLQSLALSILHLNVTTVDDMVLTSVSVKVEEGCQLNTVDEIAAAVHQLSRTVQEEVVFS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01822 318 SMART finulus 126 177 IPR011598 GO:0046983
Pste8g01822 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 187 IPR036638 GO:0046983
Pste8g01822 318 Pfam Helix-loop-helix DNA-binding domain 121 172 IPR011598 GO:0046983
Pste8g01822 318 MobiDBLite consensus disorder prediction 84 116 - -
Pste8g01822 318 PANTHER MAX DIMERIZATION, MAD 84 314 - -
Pste8g01822 318 FunFam Basic helix-loop-helix transcription factor 111 186 - -
Pste8g01822 318 Gene3D - 103 187 IPR036638 GO:0046983
Pste8g01822 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 171 IPR011598 GO:0046983
Pste8g01822 318 CDD bHLH_AtFAMA_like 123 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01822 Pste-Chr8 12769176 12771696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01822 1 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.045 3.90e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste8g01822 HLH 6.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01822 8 12769176 12771696 Pste8g01822 8 12769176 12771696 ECH
Pste8g01822 8 12769176 12771696 Pste2g02629 2 26559632 26561154 PCT