Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01820 ATGAGACTCCACAGTTTCGACCAAGGCCACGGATGGGTCGCTCTATTGCACCTGCTCATTTATATCTCACCGGCAGTAACCGGTCAACCGTTAACACCGCCAGTGGAACCCGACAATAGCAAATCTGTGGTCACCATCATGGCCATCGTGGTCATCATGTTCTTCATCTCAGCCTTCTTCTCCCTCTACTCTCGCAAATGCTCCGACCGGCAATCCCAACCAAATGGCATCATAGACACCGGCGCAGCCGGTAACCAGTTGCAAACGGAACCCAACGGCCTCAACCAAGCCACCATAGAAACCTTCCCCGTGTTCCTCTACTCGGACGTAAAGAGTCTCAAAATCGGAAAAGGCACGTTGGCATGTGCCGTGTGCTTGAACGAGTTCGAAGACGACGAAACCCTCCGCATGATCCCCAAATGCTGCCACGTGTACCACCTCGATTGTGTTGACGTATGGTTAGCCTCTCACCCCACGTGTCCATTGTGCCGCGCCAACCTCGTTCCAGAACCCCAAGACACAAACATGAACATGAACATGCCACCAATCATGTCCATTCAGATACCCGATGAAGAAGAGCGTGAACACGAGCACGAACACGAACATGAACATGAATATGAACATGAATACGGAAGTGCTGTTAATGAGGAACATAAGAGGGACAGTGACTTGGAGTCTCCGAAGGTGGACTTGCTTCGTGGGGTTCATACGTTGCATCATAGCCGTCCATCACGGTCGAGATCCACGGGGTTCTTATCTTGGTCGAACTCGATGGGGCAATTGGGTGAGAATAATTATGAGAGGTTTACGCTAAGGTTACCCGAGCAGGTGCGGACCCAGATGGTGAACTCGACGCTGAAGCGTGCTAACAGCTGCGTGTGTTTTACGAGAATGAGCAGTGGCACGTGGGGCTATCGGACAAGAAGTCTGGGTAGTGGACGAGGGAGAGGGTCTGTGCAATACGAAAGGTTCAATGGTGAGGAACAATGGGGTTTCACGTTGACGTCACCAAGTCTCATTAGGAATGGTTGGAATAGATCCACCAGAAAATCACCGGTTAATTAA 1065 0.5099 MRLHSFDQGHGWVALLHLLIYISPAVTGQPLTPPVEPDNSKSVVTIMAIVVIMFFISAFFSLYSRKCSDRQSQPNGIIDTGAAGNQLQTEPNGLNQATIETFPVFLYSDVKSLKIGKGTLACAVCLNEFEDDETLRMIPKCCHVYHLDCVDVWLASHPTCPLCRANLVPEPQDTNMNMNMPPIMSIQIPDEEEREHEHEHEHEHEYEHEYGSAVNEEHKRDSDLESPKVDLLRGVHTLHHSRPSRSRSTGFLSWSNSMGQLGENNYERFTLRLPEQVRTQMVNSTLKRANSCVCFTRMSSGTWGYRTRSLGSGRGRGSVQYERFNGEEQWGFTLTSPSLIRNGWNRSTRKSPVN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01820 354 PANTHER RING FINGER DOMAIN-CONTAINING 40 175 - -
Pste8g01820 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 169 IPR013083 -
Pste8g01820 354 CDD RING-H2_EL5-like 122 164 - -
Pste8g01820 354 SUPERFAMILY RING/U-box 121 173 - -
Pste8g01820 354 SMART ring_2 122 163 IPR001841 -
Pste8g01820 354 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Pste8g01820 354 FunFam E3 ubiquitin-protein ligase ATL6 82 170 - -
Pste8g01820 354 Pfam Ring finger domain 121 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01820 Pste-Chr8 12738039 12739103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01820 11 304 Rapid Response to Elicitors AT3G05200 36.420 8.12e-46 159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01820 8 12738039 12739103 Pste8g01820 8 12738039 12739103 ECH