Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01819 ATGGGCATCCACACGGAATGCCCTGCACCGCTGTTGATGAATCTGCATCATGATCGCACCTGCTTTCTTCTTCTCGTTATCCTTCTGTTGCCGACGGTTACAGCACAGTTCCAAAATCCACCGCCGCCGCCGTTGGATCCTTTTATAAGGTTACGCTTCGACAAGACCATGGCCGCTGTTTTGGTTATCCTCGTTGTTGTTTTCTTCGCGTTGGGATTTGTGTCTATCTACACGCGCCAATGTGCGGAGCGTAGGATCCGAGGGAGGCTAGACATCGCCGTCGCGATTGCCGGCGGGATGGAGCGCCGGCAACACCACGGCCTCGACCCGGCGATCGTCGACACGTTCCCGACCTTCGTGTACTCCGATGTTAAGGCCCTGAAGATCGGAAGGGCCACACTGGAATGTGCTGTGTGCCTCAACGAGTTCCTCGACGACGAAACGCTGCGTTTGATCCCCAAGTGTTGCCACGTGTTTCACCCAGATTGTATCGACACGTGGTTGGTGAATCACTCTACTTGTCCCGTTTGCCGCGCCAACCTCGCGCCTAAGCCCGACGACGCAACTACTCCTTCCCTTGATGATCAAATTCCGGATCCGGTCCGGCCCAATGGGCCCAACATAGAACCCCGCTATGATCCGAATTACGTTAATCCCGTTGAAGAGCCTGGAACTGAAGATCAACGGGATAGAATAATTACGGAGCTTCCAAGTGTGCTTTCAGATGAGTCGAACCGGATAATTCCGGTTCGGTCGAGGTCTACCGGGTTTGGGATTGCAAGATTGTTTCCGCGTTCTCACTCCACGGGTCACTCGCTGTTAAGACGGTGCGAGGATTTCGAGCGGTTCACGCTGCGGTTGCCGGAGGAAGTGCAGAACCGGCTCGTGAAGACGGCGACTCTAAACCGGACAAAGAGTTGTGGAGTGACGTGGCAGCGGGAGAGCAGTGAAAGAAGGGGTTACAGAACGAGGAGCGTGGGAAGGTATGAGCGGTTCGGTAGTGAAGGCCGGTTGGACCGGTGGGGGTTCATGTGGACCCCACAGTTTTGGGGTCGGACCGGTTCGGTGAGGTCACCTAAGGCTACAAGGGTTAAGGAAGATGTCTACGTGGGAGAACGTTCCTCTGATCGTTTATTTTCCAAGGAATGA 1149 0.5492 MGIHTECPAPLLMNLHHDRTCFLLLVILLLPTVTAQFQNPPPPPLDPFIRLRFDKTMAAVLVILVVVFFALGFVSIYTRQCAERRIRGRLDIAVAIAGGMERRQHHGLDPAIVDTFPTFVYSDVKALKIGRATLECAVCLNEFLDDETLRLIPKCCHVFHPDCIDTWLVNHSTCPVCRANLAPKPDDATTPSLDDQIPDPVRPNGPNIEPRYDPNYVNPVEEPGTEDQRDRIITELPSVLSDESNRIIPVRSRSTGFGIARLFPRSHSTGHSLLRRCEDFERFTLRLPEEVQNRLVKTATLNRTKSCGVTWQRESSERRGYRTRSVGRYERFGSEGRLDRWGFMWTPQFWGRTGSVRSPKATRVKEDVYVGERSSDRLFSKE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01819 382 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Pste8g01819 382 FunFam E3 ubiquitin-protein ligase ATL6 76 184 - -
Pste8g01819 382 SMART ring_2 136 177 IPR001841 -
Pste8g01819 382 SUPERFAMILY RING/U-box 135 185 - -
Pste8g01819 382 CDD RING-H2_EL5-like 135 178 - -
Pste8g01819 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 184 IPR013083 -
Pste8g01819 382 PANTHER RING FINGER DOMAIN-CONTAINING 38 185 - -
Pste8g01819 382 Pfam Ring finger domain 135 178 IPR001841 -
Pste8g01819 382 MobiDBLite consensus disorder prediction 185 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01819 Pste-Chr8 12727695 12728843 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01819 23 378 Rapid Response to Elicitors AT3G05200 39.452 3.02e-67 216