Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01802 TATATTTTGTTGGAGAAGAAAAAAAAAGGTGATTTGGTAGAGATAGAGGATAAGATAATTAATGGATGGAGGTGTCTGACTTTGGAAAAAGTTATGATGGATGTATCCACAATGCACCTTTTCTCTAATCTTTACTCTTTTTTTTTTACTATCAATAATGTACCTGCTTTGCATTTTGCAATATTTTTAATAATAAAAACACACAAGCTTGGGAAAAAGGGTACACAAATGGGTTATGCTCAGTTAAATCATCAAACTGAGACTCCCTCATACCTCATCTCACATGGTGAGAAAGTGGAGAGCGATATGGAATTCGACGAGCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCAGAGGCTGCGGTGGCGGCGCCGCCGAATTACGACTCTCTCGGGAACCCCGCGGCCAGGTCGAAAATCGGAGGCGGCGAGGGGCGGAAGGGCGCGTTCGGCGCCGCGGCGGTGCGGTACCGAGAATGCCAGAAGAACCACGCCGTGAGTTTCGGTGGCCACGCCGTCGACGGCTGCTGCGAGTTCATGGCTGCCGGAGAAGACGGCACGCTTGAGGCAGTCATCTGCGCCGCCTGCAACTGCCACCGGAATTTCCACCGCAAGGAGATCGACGGCGAGATGACCTCCTTCCACCACCGCCCGCAGCCTCCGCCGCCGCTGCACCACCACCACCAATTCTCCCCTTACTACCACCACCGCGTCCCACAGCACCCCGCCGCTGCCGGCTACCTCCACCACCACCTGGCCACGCCTCCTATGGCACAGCACCGCCCCCTCGCCCTCCCCGCCGCCGCCTCCGGAGGCGGCCTCAGCCGCGACGAAGAAGACATGTCGAATCCGAGCAGCAGCGGAGGTGGCGGCAACGGCGGCGGATCCAAAAAACGTTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTCGCATTCGCGGAACAAATAGGGTGGAGAATCCAAAAGCAGGATGAATCTACTGTGGAACAGTTCTGTGCTGAGACCAATGTGAAGCGAAACGTTCTCAAAGTTTGGATGCACAATAACAAGAACACTCTCGGTAAGAAACCC 1080 0.5426 YILLEKKKKGDLVEIEDKIINGWRCLTLEKVMMDVSTMHLFSNLYSFFFTINNVPALHFAIFLIIKTHKLGKKGTQMGYAQLNHQTETPSYLISHGEKVESDMEFDEQEEQEEEMGMPEAAVAAPPNYDSLGNPAARSKIGGGEGRKGAFGAAAVRYRECQKNHAVSFGGHAVDGCCEFMAAGEDGTLEAVICAACNCHRNFHRKEIDGEMTSFHHRPQPPPPLHHHHQFSPYYHHRVPQHPAAAGYLHHHLATPPMAQHRPLALPAAASGGGLSRDEEDMSNPSSSGGGGNGGGSKKRFRTKFTQEQKDKMLAFAEQIGWRIQKQDESTVEQFCAETNVKRNVLKVWMHNNKNTLGKKP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01802 360 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 156 207 IPR006456 -
Pste8g01802 360 Pfam ZF-HD protein dimerisation region 155 207 IPR006456 -
Pste8g01802 360 NCBIfam homeobox domain, ZF-HD class 297 354 IPR006455 -
Pste8g01802 360 FunFam Zinc-finger homeodomain protein 2 285 358 - -
Pste8g01802 360 Gene3D - 282 357 - -
Pste8g01802 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 138 356 - -
Pste8g01802 360 MobiDBLite consensus disorder prediction 267 299 - -
Pste8g01802 360 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 157 206 IPR006456 -
Pste8g01802 360 SUPERFAMILY Homeodomain-like 284 358 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01802 Pste-Chr8 12525606 12527465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01802 109 356 ZF-HD Transcription Factor Family AT4G24660 53.226 8.21e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste8g01802 ZF-HD_dimer 1.1e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01802 8 12525606 12527465 Pste8g01802 8 12525606 12527465 ECH
Pste8g01802 8 12525606 12527465 Pste2g02490 2 25215735 25217795 PCT