Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01782 CAAGAACAAAGATGCTTCCCTTTCGGAGATTCTACGGCTTCCAGAGCTGGCTCGACCATGATTCGGGTCAAGTTTCCACCTCCTTCATTAAAAAGGCAGTGGAATTCGACGGTGCCAGATCCAAAACGGACCGGAAATCATCCGAAGCCTGCAAGAGTCACAGGGAAGCTGAGAGGAGACGCAGGCAGAGAATCAATTCCCACCTCTCCACCTTACGTTCTCTCCTTCCTAACGCCGCCAAGTCTGATAAGGCGTCGTTGCTGGCGGAAGTGGTTGAGCATGTGAAACGCCTGAGGAAGGAGGCCGATGACGTGGTGTGCGGAGACTCGTCGTCGTCGAGCAGCGGAGAACCGGGTTCGGTTCGGTCCGAGATGTGGCCGTTTCCTGGGGAGTGCGACGAGGCGATGGTGAGTTACTGCGAGGGGGAAGCGAGGCGGGTGAAGGCGACGGTGTGCTGCGAGGACCGGCCGAGTCTGAACCGGGACATGACGCAGGCAATCCGGTCGGTTCGAGCGAAGCCGGTTCGAGCGGAGATGATGACGGTTGGGGGAAGGACAAAGAGTGTTGTGGTTGTAGATTGGCCTCGTGAAGAAATGGAAAAGGAAGAGGAGGTGGAGGAAAAGGAGGTTGGGGCGCTGGAACGGGCTTTGAAGGCTGTTGCGGAGAATCGAGCTTTAGTGGGCTATGGAATGGGCCCGGTTGTTGTGGGCCAGAAAAGGGGTAGGGATTGTTGCGGCTCGCCAAGTAGTGAGGTTGACTCCGCCTTCTTCTTCAGGAATGGGAACTTCTGCTAACGCGTAATTAGTTTTTTTTTTTTT 818 0.5562 MLPFRRFYGFQSWLDHDSGQVSTSFIKKAVEFDGARSKTDRKSSEACKSHREAERRRRQRINSHLSTLRSLLPNAAKSDKASLLAEVVEHVKRLRKEADDVVCGDSSSSSSGEPGSVRSEMWPFPGECDEAMVSYCEGEARRVKATVCCEDRPSLNRDMTQAIRSVRAKPVRAEMMTVGGRTKSVVVVDWPREEMEKEEEVEEKEVGALERALKAVAENRALVGYGMGPVVVGQKRGRDCCGSPSSEVDSAFFFRNGNFC 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01782 260 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Pste8g01782 260 MobiDBLite consensus disorder prediction 99 119 - -
Pste8g01782 260 Coils Coil 192 212 - -
Pste8g01782 260 MobiDBLite consensus disorder prediction 37 57 - -
Pste8g01782 260 SMART finulus 51 100 IPR011598 GO:0046983
Pste8g01782 260 Gene3D - 39 101 IPR036638 GO:0046983
Pste8g01782 260 PANTHER TRANSCRIPTION FACTOR BHLH30 32 238 IPR045847 GO:0003700|GO:0006355
Pste8g01782 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
Pste8g01782 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 100 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01782 Pste-Chr8 12217199 12218271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01782 35 218 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 47.090 4.08e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste8g01782 HLH 1e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01782 8 12217199 12218271 Pste8g01782 8 12217199 12218271 ECH