Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01770 CTGAATCAATTGCTGTCTTGTCCTTCTCCCCCAGCTCCTCTTCACCCTCACTCCCTTTCCCTCACCCAAACCCCAGTTTCCAATCAATTTCAAACTCTCGCTAGGGTTAGGGTTTCCTACTTACCACGAATTTCCACTGTAATGCGGTGCGATTCCCGTGCCGTACCATGGAGCCAGCAGCAATGTACGGTCACTCCCAGCCCCTGAACATGCCTGCGCAGATCGAAAGCGACGACGTCTCCGGCGCCGAGCCCGCCGTCGACGCCCACCACCATATTCAGTACGAAACCCACGCGCTCGACGAGGGAGCCGCCGCTGGCGGCGTGGTCGTCGAGGATGTTACCTCCGATGCGATCTATGTCTCCGGCGGTGGAGGGCCCGAAGAGTCTAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTATGTCTTTGATGCCGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTATCTTCAGGTGGTTCGCAGTGTGTGGATGCGGCGGCTCAACATAATCAGAGGGGTTCTATGGAATTTCCTACAAGATCTAGTCTACCACAGCGAGCTGCCTCATTAGATAGATTCAGGCAGAAGAGGAAAGAGCGGTGCTTTGATAAAAAAGTGAGATATAGTGTACGACAAGAGGTTGCGCTCAGGATGCACCGAAACAAGGGTCAGTTCATTTCATCTAAGAAACAAGATGGAGGTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGAGAATCAATCAGAAACCTCATGTACGCATTGTGGCATCAGTTCAAAATCCACCCCAATGATGCGGCGAGGCCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGAAATCATGAACACACTCTTCCACCAGTTGAGCAGGTCGATGAAGGTAATGACTCGGACTGTCGGACTGCTGCCGACCCAGCACGTAACAATCTCGCTGCTTTCTCAGAGCATGACAATCCAGCTTTGGTAGCTGATAGTAAAGTTTTCCAGTCCCAGAAAATGCTGGAGTAACTTTGTCTCTATATGATCGGACTCTGGCATTAGTAGGTCTATAGTTATTCCATTCAGATTGACCAATAGATTGTACAGATATAACAATACTCTCATCAATGCAAGAACTTTGTTTCTATATGATCGGATTAGTGGCATTAACCGTTGATCTCTGGATGTATAACCTGATATTTAAATGTAGA 1270 0.4866 MEPAAMYGHSQPLNMPAQIESDDVSGAEPAVDAHHHIQYETHALDEGAAAGGVVVEDVTSDAIYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSQCVDAAAQHNQRGSMEFPTRSSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFISSKKQDGGNSYGTDQDSGQDENQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEHTLPPVEQVDEGNDSDCRTAADPARNNLAAFSEHDNPALVADSKVFQSQKMLE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01770 306 Pfam GATA zinc finger 207 242 IPR000679 GO:0006355|GO:0043565
Pste8g01770 306 Gene3D - 197 255 IPR013088 GO:0006355|GO:0008270
Pste8g01770 306 Pfam tify domain 71 104 IPR010399 -
Pste8g01770 306 ProSiteProfiles CCT domain profile. 139 181 IPR010402 GO:0005515
Pste8g01770 306 Pfam CCT motif 139 181 IPR010402 GO:0005515
Pste8g01770 306 CDD ZnF_GATA 206 251 IPR000679 GO:0006355|GO:0043565
Pste8g01770 306 ProSiteProfiles GATA-type zinc finger domain profile. 201 250 IPR000679 GO:0006355|GO:0043565
Pste8g01770 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 255 - -
Pste8g01770 306 MobiDBLite consensus disorder prediction 180 220 - -
Pste8g01770 306 SMART tify_2 70 105 IPR010399 -
Pste8g01770 306 ProSitePatterns GATA-type zinc finger domain. 207 234 IPR000679 GO:0006355|GO:0043565
Pste8g01770 306 PANTHER GATA TRANSCRIPTION FACTOR 28 10 272 IPR045280 GO:0006355
Pste8g01770 306 SMART GATA_3 201 254 IPR000679 GO:0006355|GO:0043565
Pste8g01770 306 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
Pste8g01770 306 MobiDBLite consensus disorder prediction 251 270 - -
Pste8g01770 306 MobiDBLite consensus disorder prediction 174 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01770 Pste-Chr8 12010059 12014494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01770 71 295 Tify Gene Family AT4G24470 56.904 4.35e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste8g01770 CCT 6.9e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01770 8 12010059 12014494 Pste8g01770 8 12010059 12014494 ECH
Pste8g01770 8 12010059 12014494 Pste2g02555 2 25794625 25794885 PCT