Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01763 CAACTAGCTCAGATCGATTCTTCATCATGGCCTCACAAGTAGTGCAGTTACATGTCGAAGACAGTCAAGTGATTATGGACAATGGCATACTTCAAGTATATTTATCCAATCCAGGCGGATTTGTTACTAGAATACAATATAATGGCATTGATAATCTTCTTGAAGATCTTAGCGAAAAAGATGATAGAGGGTATTGGGACGTTGTTTGGAGTGAAACCGGAAGCACAGGAACAACAGGGACTTTTGAACGGATTGTAGGAACAAGTTTCAATGTTATAACGGAAAATGAAGAACAGGTTGAAATCTCGTTCACAAGTCACTGGGATTTTTCTCTGAAGGGAAAGAGAGCACCTCTTAATATTGACAAAAGGTATGTGATGCTTCGTAATTCTTCAGGATTCTACTCCTACGCTATCTTTGAACACCTACAGGAGTGGCCTGCTTTCAACATACCTCAAATAAGGATTGTTTACAAGCTTCGAAAAGACAAGTTTCATTACATGACAATATCGGATAACAGACAAAGATTTATGCCTCTCCCAGATGACAGATTACCAGAAAGAGGAAAGGAACTGGTTCCCCCGGAGGCAGTTTTGCTCGTCGATCCTGTGGAGCCAGAGTTTAAGGGAGAGGTGGACGACAAATATCAATACTCGTGTGAGAATAAACATCTTACAGTTCATGGGTGGACAAGTTCTCAAACCAAAATTGTTCCAGCCATGGGGTTTTGGGTAATCATACCCAGCAATGAGTTCCGATCTGGTGGCCCTGTTAAACAGAACCTTACTTCCCATATGTTTCTCAGTGCTCACTACGCAGGAGAGGATATAGTTTTGAAACTCCAACCAAATGAACCGTGGAAGAAAGTTTTTGGGCCAACTTTTGTTTATCTCAATACTTTGATAGATGCTGGTGACTCGCTGGAGCTATGGGAAGACGCCAAAAATCAGATGAACGAGGAGATTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCACAAGTCTAACCAAAGGGGCAGCGTGTGTGGCACATTACTAGTTCGAGACAGGTGTGTAAGTGACGAGGATATAATACCACGAGGAGCTTACGTAGGGCTGGCACCACCAGGAGAAGCTGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACTAGAGCAAATGAGGAAGGGTACTTCTCAATTAACAATATACGCAGAGGGGATTACAATCTCTACGCATGGGTTCCAGGTTTCATTGGAGAGTATTGGAGCAATGTTATCCTCACCATAACACCAGGTTGTGAAATAAATGTTGGAGACATTACTTTTGAGCCGCCAAGAGATGGCCCAACATTATGGGAGATAGGCATTCCTGATCGCTCTGCTGCTGGATTCTATGTCCCTGATCCTAATCCCAACTACGTTAACAAGCTTTTTGTCAACCATCAAGACAAGTTTAGGCAGTATGGCTTGTGGGAAAGATATGCAGAGTTATACCCAAATGAAGATTTAATTTTTACTGTGGGTGCCAGTGACTACACAAAAGATTGGTTCTTTGCTCAGGTCACCAGGAAGCAAGAAAATGGCAGTTACCAAGGGACAACATGGCAAATTAAGTTCAGCCTCGATGATGTGGAGGATGGTAAAATATACAAATTACGGTTGGCACTTGCAAGTGCAAATGTTTCCGAATTACAGGTTAGAGTGAATGATCCAAAGCAAGATCCTCCTCTGTTCACTACGGGAGTGATAGGGAAGGACAATGCAATAGCAAGACATGGAATTCATGGACTCTACTGGTTATTCAGCATTGATGTGCCTGGTCTTCTTCTACAGAAAGACATTAACACTATATTTCTAACACAGACTATGGCTAGCGGTCCCTTGGCCATTTTCCAGGAGATTTCGGCAAATGACAACAAAATGATAATTATGGATAATGGCATACTGCAAGTGTATTTATCCAATCCAGGTGGATTTGTTACTAGAATACAATATAATGGCATTGACAATCTGCTTGAAATTCTCAATGAAAAAAATAATAGAGGGTATTGGGATGTTGTTTGGAGTGAAGCCGGAAGTACAGGAACAACTGGGACATTTGAACGGATTGTGGGAACAAGTTTTAATGTCATAACGGAAAATGAAGAACAAGTTGAAATCTCGTTCACAAGACAGTGGGATCCATCTCTGAAGGGAAAGAGAGCCCCTCTTAATATTGACAAAAGGTATGTGATGGTTCGTGATTCCTCAGGATTCTACTCCTACGCCATCTTCAAACACTTACAGGAGTGGCCTGCTTTTAACATACCTCAAATAAGGACTGTTTACAAGCTTCGAAAAGACAAGTTTGGGTACATGGCCGTGTCGGATAATAGAAAAAGATGTATGCCTCTCCCAGACGACAGATCACCGGGAAGAGGAAAAGAACTAGTTACGCCTGAGGCAGTTTTGCTAGTCAATCCAGTGGAGCCAAAGTTTAAGGGAGAGGTGGATGACAAGTATCAATACTCTAGTGAGAACAAAGATCTTATGGTTCATGGGTGGATAAGTTCCCAATCCGAAGATGATTCAGCTATGGGGTTTTGGATAATTATACCCAGTAATGAATTCCGATCAGGTGGCCTTGTTAAACAGAACCTTACTTCCCACATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTTTGAAAATCCAGCCTAATGAGTCGTGGAAGAAAGTTTTTGGACCAACTTTAGTTTATCTTAATACTTCATTGGATGGTGATGACCCGCTAATGAACGAGGAGGTTCAAAGTTGGCCCTATGATTTTCCAGCTTCAGAAGATTTTCAACAATCTAGCCAACGGGGTACTGTGTTTGGCACATTATTAGTTCGAGACAGGTGTCTCAGTGACGAGAACATAATAGCAGAAGGCGCATACGTGGGACTAACACCACCAGGAGAAGCTGGATCCTGGCAAAGAGAATGGAAGGGATACCAATTTTGGACTATAGTAAATGAGGAAGGGTACTTCTCAATCGATAATGTACGCAGTGGGGATTATAATCTCTGCGCATGGGTTCCAGGTTTCATCGGAGAGTATTGGAACAATCTTGTCCTCACCATAACACCGGGCTGTGAAATAAACGTCGGTGAGATTATTTATGAGCCACCAAGAGATGGCCCAACGTTATGGGAGATAGGCATTCCTGATCGTTCTGCTGCTGAATTCTATGTTCCTGATCCCAATCCCAATTACATAAACAAGCTTTTTGCTGACCATCCAGACAAGTTTAGGCAATATGGCTTGTGGGAAAGATATGCAGAATTATACCCAGATGAAGATTTAATTTATACAGTGGGTGCTAGTGACTACACAAAAGATTGGTTCTTTGTACAAGTCACCAGGAGGCAAGAAGATGGAAGTTATCAAGGAACTACATGGCAAATTAAGTTCAGCCTCGATGATGTGGAGGATGGTAAGATCTACAAATTACGGTTGGCACTAGCAAGTGCAAACGTCTCCGAATTACAGGTTAGAGTGAATGATCCAAAGCAAGATCCTCCTCTGTTCTCTACGGGAGTGATAGGGAAGGACAATGCAATAGCAAGACATGGAACTCATGGACTCTACTGGTTATTCAGCATTGATGTGCCTGGTCTTCTTCTACAGCAAGACATTAATACTATATTTCTAACACAGACTATGGCTTCTGGCCCCTTGGCCCTCTTCCAGGGGATAATGTACGACTATATTCGTCTAGAAGGTCCTAACCCTCCTCCTCCCATAAAAAAAATATTAAAT 3785 0.4211 MASQVVQLHVEDSQVIMDNGILQVYLSNPGGFVTRIQYNGIDNLLEDLSEKDDRGYWDVVWSETGSTGTTGTFERIVGTSFNVITENEEQVEISFTSHWDFSLKGKRAPLNIDKRYVMLRNSSGFYSYAIFEHLQEWPAFNIPQIRIVYKLRKDKFHYMTISDNRQRFMPLPDDRLPERGKELVPPEAVLLVDPVEPEFKGEVDDKYQYSCENKHLTVHGWTSSQTKIVPAMGFWVIIPSNEFRSGGPVKQNLTSHMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLIDAGDSLELWEDAKNQMNEEIQSWPYDFPASEDFHKSNQRGSVCGTLLVRDRCVSDEDIIPRGAYVGLAPPGEAGSWQRECKGYQFWTRANEEGYFSINNIRRGDYNLYAWVPGFIGEYWSNVILTITPGCEINVGDITFEPPRDGPTLWEIGIPDRSAAGFYVPDPNPNYVNKLFVNHQDKFRQYGLWERYAELYPNEDLIFTVGASDYTKDWFFAQVTRKQENGSYQGTTWQIKFSLDDVEDGKIYKLRLALASANVSELQVRVNDPKQDPPLFTTGVIGKDNAIARHGIHGLYWLFSIDVPGLLLQKDINTIFLTQTMASGPLAIFQEISANDNKMIIMDNGILQVYLSNPGGFVTRIQYNGIDNLLEILNEKNNRGYWDVVWSEAGSTGTTGTFERIVGTSFNVITENEEQVEISFTRQWDPSLKGKRAPLNIDKRYVMVRDSSGFYSYAIFKHLQEWPAFNIPQIRTVYKLRKDKFGYMAVSDNRKRCMPLPDDRSPGRGKELVTPEAVLLVNPVEPKFKGEVDDKYQYSSENKDLMVHGWISSQSEDDSAMGFWIIIPSNEFRSGGLVKQNLTSHMFLSAHYAGEDIVLKIQPNESWKKVFGPTLVYLNTSLDGDDPLMNEEVQSWPYDFPASEDFQQSSQRGTVFGTLLVRDRCLSDENIIAEGAYVGLTPPGEAGSWQREWKGYQFWTIVNEEGYFSIDNVRSGDYNLCAWVPGFIGEYWNNLVLTITPGCEINVGEIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPNYINKLFADHPDKFRQYGLWERYAELYPDEDLIYTVGASDYTKDWFFVQVTRRQEDGSYQGTTWQIKFSLDDVEDGKIYKLRLALASANVSELQVRVNDPKQDPPLFSTGVIGKDNAIARHGTHGLYWLFSIDVPGLLLQQDINTIFLTQTMASGPLALFQGIMYDYIRLEGPNPPPPIKKILN 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01763 1253 Pfam Polysaccharide lyase family 4, domain III 440 613 IPR029411 -
Pste8g01763 1253 Pfam Polysaccharide lyase family 4, domain III 1048 1239 IPR029411 -
Pste8g01763 1253 Gene3D - 1046 1240 - -
Pste8g01763 1253 Gene3D - 438 623 - -
Pste8g01763 1253 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 623 1243 - -
Pste8g01763 1253 Gene3D - 6 264 IPR014718 GO:0030246
Pste8g01763 1253 Gene3D - 624 896 IPR014718 GO:0030246
Pste8g01763 1253 SUPERFAMILY Galactose-binding domain-like 437 616 IPR008979 -
Pste8g01763 1253 SUPERFAMILY Galactose mutarotase-like 625 908 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pste8g01763 1253 SUPERFAMILY Galactose-binding domain-like 1045 1240 IPR008979 -
Pste8g01763 1253 Gene3D - 936 1033 - -
Pste8g01763 1253 Gene3D - 328 427 - -
Pste8g01763 1253 FunFam Rhamnogalacturonate lyase B 328 427 - -
Pste8g01763 1253 CDD RGL4_C 442 617 - -
Pste8g01763 1253 FunFam Rhamnogalacturonate lyase B 936 1035 - -
Pste8g01763 1253 SUPERFAMILY Starch-binding domain-like 330 427 IPR013784 GO:0030246
Pste8g01763 1253 CDD RGL4_N 8 291 - -
Pste8g01763 1253 CDD RGL4_C 1050 1240 - -
Pste8g01763 1253 Pfam Polysaccharide lyase family 4, domain II 353 426 IPR029413 -
Pste8g01763 1253 Pfam Polysaccharide lyase family 4, domain II 962 1034 IPR029413 -
Pste8g01763 1253 CDD RGL4_M 331 430 IPR029413 -
Pste8g01763 1253 CDD RGL4_N 632 915 - -
Pste8g01763 1253 CDD RGL4_M 939 1038 IPR029413 -
Pste8g01763 1253 SUPERFAMILY Starch-binding domain-like 937 1035 IPR013784 GO:0030246
Pste8g01763 1253 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Pste8g01763 1253 Pfam Rhamnogalacturonate lyase family 629 820 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01763 Pste-Chr8 11917814 11934129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01763 1 618 Polysaccharide Lyase AT1G09890 61.342 0.0 802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01763 8 11917814 11934129 Pste8g01763 8 11917814 11934129 ECH