Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01761 CCACGTGACAGTTCAGAAAACCGCTGGTGGTTTTTTTTGCCCCAATTAGCGGTTTCACTGCACCGGCCAAAAGCGGGTTTCATCACTTTCCTTATATAGGTAGCTCGTGCTGATGCACATTCAACGCTTTGTCTGTTATAACCAACCTCTTCCTCACGAGTGCTTTTCTGATTCGGAAGGATCTGATTGTTAGGGTTTGGTATGGGGAGAGGAAAGATCGTGATTAGGAGGATCGACAATTCAACGAGCAGACAAGTTACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCTATCTTGTGCGATGCTGAAGTAGGAGTTATGATCTTCTCCAGCACTGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAGTCAGTAATTGATCAATACAATAAATCAAAAGAAGAACATTGTCCACTTGGAAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATATTAAGGCAACAATTACACAACCTGCAAGAAAATCATCGGAAAATGATGGGGGAAGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAACCAATTAGAAATTAGCCTCCGTGGTGTCCGTATGAAAAAGGATGAACTTTTAATGGATGAAATACAAGAACTAAATCAAAAGGGAAACCTCATACACCAACAAAATGTAGAACTGTATACGAAGGTAAACCACATTTGTCAAGAAAACATGGAATTGAAAAAGAAGGTCTTTGGAACAAAAGATGATACTGAAACAAACAGAAATTCTGTCATCACAAATGGTCTAGGCATAGGAGAGGATTTGCAAGTGCCTGTGAATCTCCAGCTCAGCCAGCCACAGCATCAACACTACAAGGCACCTTCAGGAACTACAAAATTGGGGTATGATCTATGTCTTGAAATAAATTTCTACTTCTACATGCTTGAAATTTATTTGTTGATGCTCAGATTCAAAGCCAATGAGGTTGCTTCAACTCCTCTTGAAAGAATTGATGGAGACCAAGTTGATTATTCCAATCGTGAGTAA 1050 0.4067 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDQYNKSKEEHCPLGSSTSEIKFWQREAAILRQQLHNLQENHRKMMGEELSGLTVKELQNLENQLEISLRGVRMKKDELLMDEIQELNQKGNLIHQQNVELYTKVNHICQENMELKKKVFGTKDDTETNRNSVITNGLGIGEDLQVPVNLQLSQPQHQHYKAPSGTTKLGYDLCLEINFYFYMLEIYLLMLRFKANEVASTPLERIDGDQVDYSNRE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01761 282 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Pste8g01761 282 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste8g01761 282 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste8g01761 282 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Pste8g01761 282 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste8g01761 282 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste8g01761 282 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste8g01761 282 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste8g01761 282 Coils Coil 86 113 - -
Pste8g01761 282 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste8g01761 282 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste8g01761 282 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Pste8g01761 282 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 201 - -
Pste8g01761 282 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01761 Pste-Chr8 11863978 11884249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01761 1 231 MADS-box Gene Family AT2G22630 59.072 1.88e-93 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste8g01761 K-box 6.9e-26 No_clan