Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01755 TGTGAGAATAGATGGCACCCATCCTGCAGAGCTCTCAGCCATGGCCGGCCGAAACAAGTGAAAGATGTTGCCCACCAAGATGAAGTTGTTCGAGTACTAACAAACACCCTCGAAACTGGAAGTTGCCCCCACATGCTTTTCTATGGTCCTCCTGGCACAGGGAAAACAACTACTGCCCTTGCAATTGCCCATCAGCTTTTTGGGACTGAGCTCTACAAGTCTAGAGTGCTGGAGCTGAATGCAAGTGATGATAGAGGGATTAATGTTGTTCGGACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTATTCAGCGTAAAAACGGTTATCCGTGCCCACCATTTAAGATTATTGTACTAGATGAGGCTGATTCTATGACAGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGGATTATAGAACCACTCGCTTCAAGGTGTGCAAAATTCAGGTTCAAGCCACTATCAGAGGAAATCATGAGCAACCGGATATTATACATTAGCAAAGAAGAGAGACTCATTCTTGATGCCGAGGCTCTTTCAACCCTGAGTTCTATTTCTCATGGAGATCTTCGTCGGGCAATCACATACTTGCAGTCTGCAGCTCGCTTATTTGGATCTTCAATTTCTTCGGAGAATCTGATTTCTGTGTCTGGGGTCGTTCCAGCAACGGTTGTCGAAGCAATTGTTAAAGCTTGCAAAAGTGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGATGGATATCCAGCTTCTCAGATGCTTACTCAGTTATTTGAGGCCATTGTTGAAGAAAATGACATATCAGATGAACAGAAAGCAAGAATATCCAAGAAGCTTGGTGAAGCTGATAAGTGCCTAGTTGATGGTGCTGACGAATACTTGCAACTTCTTGATGTTGTCAGCAACACAATGCAAGCATTCAGTAACATGCCAGAAGGTTCTGCCTACGAGGTGGAAGAGTTTCCCTTGGGTGGCAGCAGAGTGTGTTCCTTTCAGTTGGACACCTTGTGGCGTGCACTCTCGAGCTATTCCCAGCAAGAGCCTCATTCCCTAATGAAAGAAGACCCTGTGGAAATATGCACATCTCTATGGGTCAAAAGCTTCACTTCTTCCTCAACCACTTCATTCTCCAACCTCACCGGTTTTCTCTCCAACTTCGACCTCTGGCTCCTCGCATACCAACGCTCCTGCGCCCACGCCACCGGCACCTTCCCTCCCCGTAACGCCATCCGCACCCCCGTTCTCCACTCCCTCCTCTCCCTCCGCAACGCCGTTATCCGCAACCGTTTCCTATGGAACGACAAAGCCAACCCTCTCCTCCGTTCCCCCTACGACACCGCCGTTTCCAAACGCAAACTCCAATCCGACAACCCCTGCTTCCAGGATCGCGTCGTTCAGGAGATTCTCTTAATCATTCTCGAACCCGTCTTCGAACCCCGCTTCTCCCCCAAATCACACGCCTTTCGCCCCGGTCGAAACGCCCACACGCTTCTCCGCACCATTCGGAGTAACTTTGCAGGCTACTTGTGGTTCCTCAAAGGCGATTTGACCCTGGTTTTTGACTGCGTGGATCCTAATGTTGTAATGCGTTGCCTTGAAAAGGGTACCAGGGATAAGAAAATTTTAGGGTTGATAAAATCTGCGCTTGATGGGGATAAATTGCCCCATGCATCGCGCAAGGAAGAAAATGTTGAGGAATTGAGGAGGCAGAAGAAGAGGAGAGCTACTAAAAAGAGGATTTTGAAAGAGAATGAACCGAAACCTGATCCTTATTGGTTGAGGACGTTCTTTAGTTTTGCTCCTGAGGAGGCTGCTAAGGTACCTGATTATGGGCATTGTGGGATTTTAAGTCCTTTGCTTGCTAATGTCTGTCTTAATGAGTTGGATCGTTGGATGGAGGACAGGATTGTTGAGTTTTTCAGGCCTTGTAAGTTTGATTCCATATGGAAGTATTCAATTGATGATGGGTGCCATAACCCGGCGTGGCCGGAGTTTGTTCCGTCCAGTGGGAGAGAAAAGACCAGGAAGATGGATTATGTTAGGTATGGGGGGCATTTTTTGATTGGGATTAGAGGGCCTAGGGAGGATGCTGTGGAGCTTAGGAAGAATATTGTAGCATTTTGTGATAGTGTGTTTGGGGTGAGGTTGGATAATTCGAAGCTCGAGATTGAGCATGTTTCTAGGGGGATACAATTCTTGGATCATATAATATGCCGGAGGGTGATACACCCTACCTTGCGTTACACGGGTTCTGGAGGGAACATAGTGAGTGAAAAGGGTGTGGGGACTTTGCTTTCTGTTACTGCTAGTTTGCAGCAATGCATTCGCCAGTTTAGGCGGCTTGAGCTTGTGAAGGGTGATAAGGACCCTGAGCCACTTCCGTGTACTCCTATGTTGTATTCGGGTCAAGCTCATACAAATTCTCAGATGAATAAGTTCCTTGAGACCATGGCTGATTGGTATAGATATGCTGATAATCGGAAAAAAGTTGTTGGCTTTTGTGCATATGTTGTTCGGAGCTCATTGGCTAAGTTGTATGCTGCAAGGTATAGGCTGAAATCCCGTGCCAAGGTTTATGGCATAGCTTCACGGAATCTCAGCCGTCCTCTGAGGGAGAGCAGTAACAATTCTGCACCAGAATATTCGGATCTTTTGAGGATGGGACTGGTTGATGCAATTGAAGGTGTTCAGTTTTCACACATGTCTTTGATTCCATCTTGTGATTATACTCCGTTCCCGAGGAACTGGGTCCCTGATCATGAGAGGGTGTTGCATGAGTATATAAAACTTGAAAATCCCAAGTTTTTCTGTGAGTTGCTCCGATCTGTTAAGCAAAAAGGTTTAAGTCTGCCTCAAGATGAAATATCTCAAATGGTATGGGACTACAAAACTCTGGGGGTTCGTTATTTTCAATCTAACAAGGATAAAGAAATAAAATCTGATTTGAAGAAGATAGCTGATGGTAATTTTGATTTGGCAAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATTCAGCTCCTCAGATGCTTGCTCAGTGCCTAATTGATGGTGCTGATGAATACTTGCAACTTCTTGATGTGGTCAGCTACACAATGCAAACCTTTTGTACA 3186 0.4545 CENRWHPSCRALSHGRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGTELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTIQRKNGYPCPPFKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSNRILYISKEERLILDAEALSTLSSISHGDLRRAITYLQSAARLFGSSISSENLISVSGVVPATVVEAIVKACKSGNFDLANKEVNNFIADGYPASQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLVDGADEYLQLLDVVSNTMQAFSNMPEGSAYEVEEFPLGGSRVCSFQLDTLWRALSSYSQQEPHSLMKEDPVEICTSLWVKSFTSSSTTSFSNLTGFLSNFDLWLLAYQRSCAHATGTFPPRNAIRTPVLHSLLSLRNAVIRNRFLWNDKANPLLRSPYDTAVSKRKLQSDNPCFQDRVVQEILLIILEPVFEPRFSPKSHAFRPGRNAHTLLRTIRSNFAGYLWFLKGDLTLVFDCVDPNVVMRCLEKGTRDKKILGLIKSALDGDKLPHASRKEENVEELRRQKKRRATKKRILKENEPKPDPYWLRTFFSFAPEEAAKVPDYGHCGILSPLLANVCLNELDRWMEDRIVEFFRPCKFDSIWKYSIDDGCHNPAWPEFVPSSGREKTRKMDYVRYGGHFLIGIRGPREDAVELRKNIVAFCDSVFGVRLDNSKLEIEHVSRGIQFLDHIICRRVIHPTLRYTGSGGNIVSEKGVGTLLSVTASLQQCIRQFRRLELVKGDKDPEPLPCTPMLYSGQAHTNSQMNKFLETMADWYRYADNRKKVVGFCAYVVRSSLAKLYAARYRLKSRAKVYGIASRNLSRPLRESSNNSAPEYSDLLRMGLVDAIEGVQFSHMSLIPSCDYTPFPRNWVPDHERVLHEYIKLENPKFFCELLRSVKQKGLSLPQDEISQMVWDYKTLGVRYFQSNKDKEIKSDLKKIADGNFDLANKEVNNFIAEGYSAPQMLAQCLIDGADEYLQLLDVVSYTMQTFCT 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01755 1062 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 482 576 IPR000477 -
Pste8g01755 1062 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Pste8g01755 1062 FunFam Replication factor C subunit 4 240 329 - -
Pste8g01755 1062 CDD HLD_clamp_RFC 174 233 - -
Pste8g01755 1062 MobiDBLite consensus disorder prediction 583 602 - -
Pste8g01755 1062 Gene3D - 240 329 - -
Pste8g01755 1062 FunFam Replication factor C subunit 5 6 174 - -
Pste8g01755 1062 CDD AAA 26 166 - -
Pste8g01755 1062 SUPERFAMILY post-AAA+ oligomerization domain-like 999 1056 IPR008921 GO:0003677|GO:0006260
Pste8g01755 1062 CDD RT_G2_intron 482 761 - -
Pste8g01755 1062 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 232 IPR027417 -
Pste8g01755 1062 Coils Coil 581 608 - -
Pste8g01755 1062 Gene3D - 176 239 - -
Pste8g01755 1062 FunFam Replication factor C subunit 4 176 239 - -
Pste8g01755 1062 Pfam Type II intron maturase 834 884 IPR024937 GO:0006397
Pste8g01755 1062 SMART AAA_5 41 190 IPR003593 GO:0016887
Pste8g01755 1062 SUPERFAMILY DNA/RNA polymerases 482 768 IPR043502 -
Pste8g01755 1062 Gene3D - 11 173 IPR027417 -
Pste8g01755 1062 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Pste8g01755 1062 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Pste8g01755 1062 PANTHER NUCLEAR INTRON MATURASE 1, MITOCHONDRIAL-RELATED 373 1000 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01755 Pste-Chr8 11794849 11806397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01755 16 336 Core DNA Replication Machinery Family AT1G21690 77.329 1.17e-172 507