Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01742 GCTGCTGTGGCTCCATGTTGAGCTTAATTTTCAATTCTGTAAAATCTTTACTAGTTTTTGTATTGTAATATCTTCTGAAATATAACAGTAATTTATCTATTTTGGCCAGTGTTGATAACTGATGGGTAGGCGAAAAAGTAAACCACATCGAGCAGGTGACATAATACTAGAGACAAATGCTACTGCTGAGACAGAATTGGGTACACAAAATGTTGTAGAAGGAGGGGAAGAAGCAAAGGGTGATTCTGGTGGCATTGATAAACCTTATTTTGTTGAGGTTGACGGGTCTGGTTGGTTGTCTAGTGAACACCTTGACATTTCTGAGGTTGTTTTGAGGGATTTAAATTTGAGAGAAGGTTGTTCTGGTTTTGAACTTTGTGAGGATTTTTATCGGGATCAACAGTATTTGTTAAGATTTCGGGTATGTAATGTCAGTAATCTTCTGGGTAGAATTAAATTAGGCCATTGGCCTATGATACCCTATACTGATATTCATCTAGAGTTTGTAAAAAGAGTCACCGTTGACCATGTGGAAACATATACAGTGTTGTTATCTGGTGTTTTTGATGGACCAAATGAAGGTGTTAGTGGTCTTCTTCATTTGGCAAGTTTGAAGTTTGTTACATTGAGGCCAGTTTTTGGGGTTAGGATTTCTGAGGAAATTTCCTCCCTTAGGATAAGGGTTGAGGTGTTAAAGAGCGCTTTTGATGCATGTGAGTCCATTCTTGATAATTCCAGGCAGCTGTGGAAAAAGAGTATGATGAATGTGATGTCTTGGCTACGTCCAGAAATAATGACTTCGGAAGCTAGGTATGGGTTTGTTAGCCATATGAAAATGAAAGTTGATCCACAGGCAGAGATGGCCAATGACACTTGCAAGGCAAGGAAACATGGAAGGTTTGATCCTGCAGGATTCTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTCAAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAACGGCGTGCAGCTTTTTGGATGGTAGAACAGGAGAAAGTAGTGGAAGAAAGTCAGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCATTATGTATACCAGTGAATTTTCTGGACACCAGTTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTATGCCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTTCTCACCGTAGATCAGCATCTGGAAGTGATATATTAATTGATTTAGAGCCCCAAGTAAATGGGGACCAAAAAGTCACTTTGAAAAGACTTAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGTGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGCTATTCACCTAAAGGAAAATCTTTGAAATCAAAACAAGGATATGAGAGCAAGACATATAAAACTACTGTAGCTGTGAGGGATGGAGAATATGTATGTAAGATGTGTTCTGATCTAATACAAGCTACTGAATCTCCTATTGCCTCTGGTGCCACTCTCATTGTCTGCCCAGCTCCCATTTTGCCCCAGTGGCATGATGAAATTACACGTCATACACATCATGGCTCTTTGAAAACTTGTGTTTATGAAGGGGTGCGCGACACATCTTCTTCCAATATGTCATCTTCTCTGATGGATATCAGTGATCTTGCTAGTGCTGACATTGTATTAACTACGTATGATGTGCTTAAAGAAGATTTATCCCATGATTCAGATCGGCATGAAGGTGATAGACACTTTTTGAGATTTCAGAAAAGGTATCCAGTCATCCCAACGCTTCTTACAAGAATATACTGGTGGAGGATTTGCTTGGATGAGGCACAGATGGTGGAGAATAATGCTGCTGCTGCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGTTGGTGCATAACTGGGACCCCAATTCAGCGTAAGCTTGATGACTTATATGGACTTCTAAGATTCCTTAAAGCTAGTCCTTTTGATCGATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGTGGGGGCTATGGAATTTACGCACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAGAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTCTCACCGGTAGAGGAGCACTTTTACCAAAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAGCGATATTCTTAATAGAAAAGGCCCAGGTTGTTCCTCTGATCCTTTAATCACTCAGACTGAGGCAGGGAAGCTTCTGAATGCTTTACTGAAGCTTCGCCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTGCAGCAATCACCTATGACCATGGAGGAAATACTGTTGGTTCTTATAAGCAAGACCAAGATAGAAGGGGAGGAAGCACTCAGGAAGTTAGTTATTGCTCTGAATGCCCTTGCTGCAATAGCTGCAATACAAAAAGATTTTTCTCAAGCTACGTTACTGTACCGTGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTAGACCCTTTGTTGAATATCCACATTCATCACAATCTTGCTGAATTACTCCCACTGGCTTCAAACTTTACTTTAATATTTCCATCCAACGGAAAACAATTCTCTGAAACTTCTGAATTTAAGACAACCAAAAGCCATTTTATTGTAAAGGCTGATCATTTTCCTATGAAGAAGCAAAAAACAAGTGGATCTGATGACGTAAATGTAACAGTGTCATCTTCAGAACCATCAAATGTTGCATCTAATGAGGATCGGGAATTTGATAATTTATCGACCACTTTTGTCAAATCTCTAATAGCAGAATGTGAAGATTTTAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTATCAGCAGCCCAACATGAGTTTCAAAATTCTTACACACAGGTCTGTAATGCATATCATGACAGCAGAACAGATAAAAATGCATTTTGGTGGTTAGAAGCACTCCATCATGCTGAGCAGAACAAAGATTTCTCCACTGAGTTGATTAGGAAGATTGAAGAAGCTGTCTCAGGAGCTGCAAATAATTCAAAGTCATCTAGAATAGCTGCTTGTTTTGGAAGCATAAGCTCCTTGAAGTATCAAATTCAGACAGGTTTGGATCGGTTAGAAGCCTCTAGAAAAACACTCATAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCCAAAGAAGAAGATATTGATCGTGTGGGTAAATGTCGAAATTGTCAGCCTAATTGTGATGGACCCCCGTGCGTTTTGTGTGAACTAGATGAATTATTTCAGGATTATGAAGCCAGACTCTTTGTTCTTATGAATCAACATGGACGAATAATTTCGTCTGCTGAGGAGGCAGTAGATTTTCAGAAGAAAAACTTTGCATTGAAGCATTTCCTCTCAAAGCTGTCACAATCTAATCACAGTTCTACGGTACCTGATGTTGGTTATGAAGAATCAAAGAAAAGGAATGTTGGACAAAGAGTTGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTATCGGAGTTATAAAGAACTACTGCAAGGCTCGCTTAGGAAGGGACAGTGTCTCGGCTGCCACCACACATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATAAAGATGGCAGTTTCCCGTTTGCACCTAAGGGCAAATGAAGATGATAAATCTCTTGATGCTTTAGGTGAAAATGAATTAGCTGCAGCTAGCTCAGACTTTTCCCATGATAAGTTTATGTCATTAACCATGTTGTCCCAGATAAAAGGAAAACTCCGCTATTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTACAATTCGATAGTCCAAATAGTTCTTCACTCACACGAGAGACAACTTCAATGTCGAACTCTACAGAAGAAAATGGTGCACTTGTATCTAAAACTGATGATGAAACATGCCCAGTTTGCCAAGAAAAGCTAGGCAATCAGAAAATGGTTTTTCAATGTTTATTTGCTATGACTGAGAAAAGACTTCAAAACATCATGCTTCATAATTGGGTGATGTGCCCTACATGTCGACAGCATACTAATTTTGCGAACATTGCCTATGCTGTTGATGCACAGAATGAATCTTACAGTTCCTCAGTGCTACATACTATTAATGGTAGTGAAAAATGTGAAGCATCCCTTAGTGTCAAAGGCTCATATGGAACCAAGATTGAAGCAGTAACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAGAGCAAAGGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTGCAGCCAATAACATTACCTACATCCGGATGAAGGGAGGCAGAAAAGCACACGTTTCCATCAGTCAATTTAGAGGAAAACAAAATGGCACAAAAGGATGTGAGGGATCAACACCAAAATCTATTCAGGTATTGCTGCTTTTAATCCAACATGGAGCCAATGGACTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCGTTGCTCAATCCAGCTGTAGAAGCACAAGCGATCAGTCGTGTACATCGGATAGGACAAAAACATAAGACTCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTATATATAAGATGAACAGAAGCAGAAGCAATTATTCATTCATCAGTGGGAACACTAAAAATCAAGATCAACCTGTTTTGACCCTAAAGGATGTGGAAGCCTTGCTGTCAAGAGCACCACTAACAATGCCAGAAAGTGATGAAAATCCTAACATAAACACAAATCTAAGACACTTGCCACCATCAATGGCCGCTGCTATAGCTGCCGAGAGGAGACTAAATGAGCAAAAGACATGATTTTGCTTCTCACTTAGTTCAATAGAAGGGGTTGCTATGCATTTCAAAGATGCCATTAAACACAAGTGCGGTAGTTTCAAGAGGCTAGAGGAGATGCAATGCGACAAACTATTAACCATTGATTCTCCCAACCAACCATAGTTTTAACATCTAGTATTTATAAATTTATTTATTCTTGTATATATTTGGATGCATTAGAATTTTATATTTTTTATAGATATA 5305 0.396 MGRRKSKPHRAGDIILETNATAETELGTQNVVEGGEEAKGDSGGIDKPYFVEVDGSGWLSSEHLDISEVVLRDLNLREGCSGFELCEDFYRDQQYLLRFRVCNVSNLLGRIKLGHWPMIPYTDIHLEFVKRVTVDHVETYTVLLSGVFDGPNEGVSGLLHLASLKFVTLRPVFGVRISEEISSLRIRVEVLKSAFDACESILDNSRQLWKKSMMNVMSWLRPEIMTSEARYGFVSHMKMKVDPQAEMANDTCKARKHGRFDPAGFYEAIKPSKAEPMLKDDIPELLPKLRPYQRRAAFWMVEQEKVVEESQGERERNQFHSPLCIPVNFLDTSSQMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFSHRRSASGSDILIDLEPQVNGDQKVTLKRLKRERVECICGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGYESKTYKTTVAVRDGEYVCKMCSDLIQATESPIASGATLIVCPAPILPQWHDEITRHTHHGSLKTCVYEGVRDTSSSNMSSSLMDISDLASADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRICLDEAQMVENNAAAATEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLKASPFDRYRWWTDVIRDPYEKGDVGAMEFTHKVFKQIMWRSSKEHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRSDILNRKGPGCSSDPLITQTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILLVLISKTKIEGEEALRKLVIALNALAAIAAIQKDFSQATLLYREALTLAEEHSEDFRLDPLLNIHIHHNLAELLPLASNFTLIFPSNGKQFSETSEFKTTKSHFIVKADHFPMKKQKTSGSDDVNVTVSSSEPSNVASNEDREFDNLSTTFVKSLIAECEDFKQKYLSVFSSKLSAAQHEFQNSYTQVCNAYHDSRTDKNAFWWLEALHHAEQNKDFSTELIRKIEEAVSGAANNSKSSRIAACFGSISSLKYQIQTGLDRLEASRKTLIDRLLEIDQTMEKPKEEDIDRVGKCRNCQPNCDGPPCVLCELDELFQDYEARLFVLMNQHGRIISSAEEAVDFQKKNFALKHFLSKLSQSNHSSTVPDVGYEESKKRNVGQRVVVSRSASELELIIGVIKNYCKARLGRDSVSAATTHLHVFEGMRKEFGHARSLALAQAQYLRAHDEIKMAVSRLHLRANEDDKSLDALGENELAAASSDFSHDKFMSLTMLSQIKGKLRYLKGLVQSKQKLQFDSPNSSSLTRETTSMSNSTEENGALVSKTDDETCPVCQEKLGNQKMVFQCLFAMTEKRLQNIMLHNWVMCPTCRQHTNFANIAYAVDAQNESYSSSVLHTINGSEKCEASLSVKGSYGTKIEAVTRRILWVKANDHRAKVLVFSSWNDVLDVLEHAFAANNITYIRMKGGRKAHVSISQFRGKQNGTKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAVEAQAISRVHRIGQKHKTLIHRFIVKDTVEESIYKMNRSRSNYSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESDENPNINTNLRHLPPSMAAAIAAERRLNEQKT 1653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01742 1653 CDD SF2_C_SNF 1431 1568 - -
Pste8g01742 1653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 481 IPR013083 -
Pste8g01742 1653 CDD PHD_TCF19_like 416 481 - -
Pste8g01742 1653 SMART helicmild6 1465 1557 IPR001650 -
Pste8g01742 1653 SUPERFAMILY RING/U-box 1339 1400 - -
Pste8g01742 1653 MobiDBLite consensus disorder prediction 1315 1341 - -
Pste8g01742 1653 MobiDBLite consensus disorder prediction 918 940 - -
Pste8g01742 1653 CDD DEXQc_SHPRH 289 690 - -
Pste8g01742 1653 Pfam SNF2-related domain 292 781 IPR000330 GO:0005524|GO:0140658
Pste8g01742 1653 Pfam Helicase conserved C-terminal domain 1435 1557 IPR001650 -
Pste8g01742 1653 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Pste8g01742 1653 Gene3D - 1408 1622 IPR027417 -
Pste8g01742 1653 MobiDBLite consensus disorder prediction 916 940 - -
Pste8g01742 1653 Gene3D - 482 711 IPR038718 -
Pste8g01742 1653 MobiDBLite consensus disorder prediction 1315 1338 - -
Pste8g01742 1653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1339 1407 IPR013083 -
Pste8g01742 1653 SMART ultradead3 285 660 IPR014001 -
Pste8g01742 1653 Pfam PHD-finger 415 482 IPR019787 -
Pste8g01742 1653 SMART PHD_3 414 482 IPR001965 -
Pste8g01742 1653 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Pste8g01742 1653 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 51 1652 - -
Pste8g01742 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 687 IPR027417 -
Pste8g01742 1653 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1437 1608 IPR001650 -
Pste8g01742 1653 Gene3D - 346 397 IPR038718 -
Pste8g01742 1653 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 1610 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01742 Pste-Chr8 11524107 11548416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01742 489 779 RAD5 or RAD16-like Gene Family AT5G22750 31.419 9.22e-36 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste8g01742 SNF2_N 4.6e-86 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01742 8 11524107 11548416 Pste8g01742 8 11524107 11548416 ECH