Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01714 GGAATTTCTATTCTGAATTTTCACAAACAGTGTGCCAATTCTTGTGATAAAAGTAACACACGCAGCCCACCTTACCTTCACTTTCACTTTCTCAGCAACTTCCTTTAGCCGTGACGGAAAACTCAAAAAGCAGCGAAAATCCTCAGAATCCCTACGATTCCCACTTCTAATTTCTCCTTATTTATCTCAAAGATTTCTCATTTCTCTCCTTTTCTCTCTCTCTCGCTCTCTGGGTATTGAGAAAGCGCGCTTAACTGTCATGGGTGCCGCCGTCGTCGAGTGTTACCCGCCGCCGCTCACGGCGGTGCTGTCCCTTAACACCTTGCCTTTAGGGTTCCGTTTCCGTCCCACCGATGAGGAGCTTATTGATTACTACCTGCGCTCGAAGATCAACGGACACGGTGATGATGTCTGGGTTATTCGTGAAATTGATGTCTGCAAATGGGAACCTTGGGATTTGCCAGATTTGTCAGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGACCGGAAGTATCCAAATGGGCACAGGTTGAACCGAGCTACGAGTCATGGGTATTGGAAGGCTACAGGGAAGGATCGAAGGATTAAGTCAGGTTCGACCTTGATTGGAATGAAGAAGACTCTTGTTTTTTATACCGGTCGTGCTCCCAAGGGGAGAAGGACCAATTGGGTCATGCATGAGTACAGGCCTACCCTCAAGGAGCTTGATGGTACAAATCCTGGACAGAATCCATATGTCCTTTGTCGATTATTTAAGAAGCAAGATGAGAGTCTTGAAGGTTCAAATGGTGATGATGTGGAGCGAACTACATCAACTCCTACAACTGCCTATTATTCTCCAGATGAAATACAATCTGATTCAGCTCAGGTTCCAGCATCTTCCTCACAGGTTACTGAAGATGATAAGCCTCTAGCAGTTATAGCTGAGAACTCTGAGGAAGCAATATCCAACATTATAACTCCAGTTGATTGCCAAAGTGATGGATGTGATGCTCCTGATGCTCAAAATAAATTTGTAATACCAGCTTCAGAGGAGGATCAGCCATTGGACGTGAACATGTTTTATGACCCAACAAGTCGGCAATTAGATGACAAATTATTCTCCCCTGTCCATGCGCATTTCCCACCAGATTTTTATTATCAAGATAACAATCAACCAGAACATCAGTATGGAACAAATGAGACAAATATAGACTTTTTTGACTCGGTTGTTAATTGGAGTGAGTTCTGCTACGATACCAGCAGTCTAGATTTGATCTCATCCATCCTTAATGCAAAGGACAATGGATCAGGCAGTGACTCAGAAGTGGAAATGGCCAACACGTCGCATCTGCAAGCATTACATGATTTTCCTAAGGAGGCAATTGAGCAGAGCAATGTAGAATTATTTCAGAACCCCCAGATGGGTTTCCCAAGTGATGGTAACATGGGCCAACTGGACATTGTGGTCAACAGTGATGAGCAATCAAGAAACTTTGATGCCTTTGCTAATGGTAATAATGGAATCAGAATAAGGACTCGTCCAGGACGAAATGAACAGCCAAACATGAATGCAATGGCACAATCCCAAGGTAGTGCACCAAGGAGAATTCGACTGGGAGTTGTTAGGCGTCCACTTGGTTCCCAGGAGATGACAAAAGATGGTAGTTGTGCTTGTGTCCCAGAAGACCATAATTCAAAAACAATCATTGCTAAGGAGAGGAGAACTTCAGAAAACCATGCTGCGGACAAGAGTTCCATTTTTACTAATGATATGGATGAACCAGAGGATGCATCTCCCGAGCCAGCAGTCGAATCAAGAAAGATAAGTAAGCAACATGTTGCAACTGCAGAATCCATCTCTGGGTCAAAAGACCTTCTATTGAGAAGAAGAGGCCGCTGCACCTCAAAGGTTTCCTCTAACCAGGCCACGTGGTCTTATGTTCTTGCGGTTTCTGCCACTGTATTGGTCTCTGCAATAGTCGTTATTAATATATGGGCTTATGTCAGAGCCTGAACTGCTTACTGTAGTAGATAATTTCTGTTGTGAGGAATTTGCCTCCATTGCTTTTTTGGCCAATTAAGGAGGCCTGTAGGATTGACTTCTTAGAGACTTGTCGATAAGAATGTACAATATATATGTGCATATATGTATGTTGTAGTCATTGCAGAATATGGTAACATAGTTGTGTAGTCTGACAAACACGTGTGTTGCCACAGTTAGATTCACAATGTGACCGTTTTCATTTTTTATTTGAGGGTAAGGTTAGTTTTCTCTCTTGGCTAGTGGTGATAACACGCAGTTACCCTGGAATTTTGACTGTAACTTTACCACCTGTGCTTTGTTCCCATGTGGTTTTATTGTATCACTTTTCGGCTATGTTAAAGTAGAGTTAGTAGTATTCTG 2401 0.4319 MGAAVVECYPPPLTAVLSLNTLPLGFRFRPTDEELIDYYLRSKINGHGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRRIKSGSTLIGMKKTLVFYTGRAPKGRRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKQDESLEGSNGDDVERTTSTPTTAYYSPDEIQSDSAQVPASSSQVTEDDKPLAVIAENSEEAISNIITPVDCQSDGCDAPDAQNKFVIPASEEDQPLDVNMFYDPTSRQLDDKLFSPVHAHFPPDFYYQDNNQPEHQYGTNETNIDFFDSVVNWSEFCYDTSSLDLISSILNAKDNGSGSDSEVEMANTSHLQALHDFPKEAIEQSNVELFQNPQMGFPSDGNMGQLDIVVNSDEQSRNFDAFANGNNGIRIRTRPGRNEQPNMNAMAQSQGSAPRRIRLGVVRRPLGSQEMTKDGSCACVPEDHNSKTIIAKERRTSENHAADKSSIFTNDMDEPEDASPEPAVESRKISKQHVATAESISGSKDLLLRRRGRCTSKVSSNQATWSYVLAVSATVLVSAIVVINIWAYVRA 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01714 583 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Pste8g01714 583 FunFam Nac domain-containing protein 86 31 175 - -
Pste8g01714 583 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 253 - -
Pste8g01714 583 MobiDBLite consensus disorder prediction 423 443 - -
Pste8g01714 583 MobiDBLite consensus disorder prediction 412 445 - -
Pste8g01714 583 MobiDBLite consensus disorder prediction 487 527 - -
Pste8g01714 583 MobiDBLite consensus disorder prediction 183 219 - -
Pste8g01714 583 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Pste8g01714 583 MobiDBLite consensus disorder prediction 176 219 - -
Pste8g01714 583 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Pste8g01714 583 SUPERFAMILY NAC domain 15 172 IPR036093 GO:0003677|GO:0006355
Pste8g01714 583 MobiDBLite consensus disorder prediction 487 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01714 Pste-Chr8 11134938 11138924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01714 15 451 NAC Transcription Factor Family AT4G35580 43.111 6.89e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste8g01714 NAM 9.2e-36 No_clan