Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01666 ATGCAGGACAGAAGCACGCTCAAGAGACCGCGCCTGCGTGCCACGTGGGATACCATGCATGGGTGCCAGCGTGGACCAATGAGAACAAATTACACGAGTGAGCAGGGTACAGAGAATTCTCGTTCCCCGTTTGCCAGTTATGTGTGTGAGGTACGTGCGGCATTCTCAGCTGTCACCATGACTCTCACTCTGAATCACTCTCCAATGGATGTTGATGGGGAGAAGAGTTATGGGAGCATTAAACGTAGAAGAGGGTCTAGGAAAAGAAAGCTTCTTGTCAACGAGAGAGTCGAGGTGAAGAGTGTGGAAGAGGGTTTTCAGGGTTCATGGCATCCGGGGACGGTGATCCGTTGTGGGAAGCAGAAGCGTCATGTCAAATATGACTACATTCTGAATGATAAAGCATCAAAATATCTTGTGGATGTTGTGTGTGTTTCACTTGTTTTAGATGGTATTGCTTCTTCTTCAGACTGTGGCAATGAATATGGATTCATTAGACCACTGCCTCCTCCGCTTGAGTTTGGGGAGAGGGACCTTCTATTTGGTCGCTGTGTTGATGTGAATTATAAAGAAGGCTGGTGGGAAGGTGTCATATTTGACCACTTCAATGGAATGGAGGAGAGGAGCGTGCTTTTCCCAGACTTGGGAGATGAAATGATCATTGGAACTCATCAATTGCGGATAACTCAGGATTGGGATGAAGCTACTGAGAATTGGGAGCAGCGAGGGAAGTGGACGTTCCTTGAAGTGGTTGAGGAGAGTGAGAGAGAATCCATTATTGCAATTTCAGTGAAGCAGATATGGTATGATATAAGGGCAAGAAAGGATTTTGACGATATAATAAAGCACTGGACTTGTAACCTGAAGGAATTGTGGAGAGGCCTTGTAGATGAGGTGGTTGGTGACTACTACACTCTCACACTAGATGAAGTTTTCCCAGCCTTGAATTTCTCGGAGGATTTCTTGAAAGAAACTTCAGAACTGCATTCAGTTGAACCTATTGACAACATTCATTATGATGTTAATGAATTTGGTTCTGACATTGTAGTAACTGATAGCCCTATGGAAAATAGGGACACATCAAATTTGTTGGAAAGCGATAAAATATGTTATAGCATAATTCCCCTTCAAGAGAAGGAAATTAGTATCCTGGAAGAACCTTTATCTCCAGTTCAAGAGATCAAGCCTGATGCTGGTGAGATAATGGAAGCTCGAAACAGTACTGAAAGAAAGAGAAAACGTAGACGCTCAGGGTCCTTACATTGGAAACCATTGGTGCTGAGCGAGGTTGAATCCTGTCCTGATGTTCTGAAGCAATATTTGCTTGGACACGGAAGCAAGACAATCCGGGAACTTTTGAAGACTAAAGTACGGAACCATCTTGCTTATCTTGGCTGGCAAATAGAATGGACTGATGATAAATATTTTCCTGGGCGAGGACGCTACAGGTACAAGTCACCTGATGCACAGGACCAGAAGATTTACAGTTCAATTATTCAAGTGTTGACACATATGCAAATGGAGTCCACCATGAACATTGAGCAACCCCAAATCGATCATGATAGGATGCATACTACAAATGACACCAATCTTTCATATCTGCTTTCAGATCAACCCTCAAATGGCCAGGATGTAGATGTTTGTTCTCCAAATGGGGAACCTTCTCATGCCAAAGTTGAAATTGAGATGGGATTTTGTCCTCAAGCTGTTGTGAAATATTACTTGAATGCATCAGATAAATATTGGGTTGATAAAGGAAAATGGAAACTGAAAGCAAAGAAGCATTTGTTAGCAGAAGGATGGACCTTTGAATATCCAACCAATAAGAGAAGGACAACTTTGTATATGTCTCCGCGAGATCAGTGTTTGGGCACACTTCGAGGTGCATGTAGACTATACATTAAAGATAAAATTCCTGAATGGACTAATTCTGGCATGATACCTTTGAATGTCCCAGCCATGAATGAAGAAAGTGTTGGTCATGTTGATAGCGATGATCTATTCCAAATTTTGTCCCAATTGCTTGAAAAAGAGCCTGAATTGCTAACTACTTCACCAGTAAGGATATCAACTGATAATGAAAACCATACACGCAGAGGGAAACCAAAGGCTTCCAAGCCAAAGCACCACAGGAAAGGATCATCTACACTCATGCTAAGATCAAGTAAAAGGGTGCAGAAGGTATCTGCCTCTAGTTTGTCACAGCAAAGACCCCAAAATGTTATTTCTTGGTTAATTGATAATGAACTAGTGATGTCAAGATGTAAAGTCTATTGCTACGCAGGAGGAAGGAACCCTGATGTGGCTGAGGGGAGAATAACTTATGATGGAATCAAGTGTAGCTGTTGCCCGAAAATATATGGTATTGATGGTTTTGTAAATCATGCTGGTGTAAGTAGTGACTGCAGGACTTCTGCTAGTATCTTTTTGAAGGATGGTAGGTCACTCTTAGATTGCATGATAAAAGCGATGCATAATCATAGAACAAGGGAAGATATGAACACACCATGCTATGCTTTGTCTGAAGGTGAAAATGATAACATTTGTTCTGTCTGTCAGTTTGGTGGCGAACTTATTTTATGTGACCAATGTCCATCCGCATTTCATAAGGCGTGTCTTGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCATGTCGTTGTGGGATTTGCGGTCAAATCAAAATAGCAGGGACTGAGGATGTCTTTTTTCTTACTTGCATTCAATGTGAACATAAATATCATGTTGGATGCTTGAAAAGTAGAGAAAAAGATGAGTCGAGAAGATATATGGAAAATTGGTTGTGCGGAAGAGAGTGTGAACAGATATATGCAGGCCTCCAAAATCTATTAGGAAAGTCACTTATGGTGGGTGCAAACAATCTAACTTGGACATTGGTGAAGTTTATCAACTCTGAGAATCATGATGTTGGTACTACTAAGAATGACTTAATGGCAGAGAAATACAGCAAACTCAGTGTTGCACTTTCGGTGATGCACGAGTGTTTTGAGCCTGTAAAGAACCCTTTCACTGGTAGAGATATCATTGATGATGTTATGTTCAACACTAGGTCAGAGCTTAATCGACTGAATTTCCATGGTTTCTACACTATACTTCTGGAGCAAAATGAAGAATTGATTAGTGTAGCAACTATTAGGGTATTTGGACAGAAAGTAGCAGAGGTGCCGCTTATAGGTACCAGAATACAATATCGTCAACTTGGAATGTGTCGCATTTTAATGAATGAGCTGGAGAAGAACCTCATGAAACTAGGAGTGGAGAGGCTAGTCTTGCCTGCTGTTCCTGATGTTCTAGAAACATGGACCAAATCTTTTGGCTTTGCAAAAATGACAAGTTTTGAGAGGTCACAGTTCTTGGACTGTGCTTTCCTAGACTTTCAGGAAACCGCCTTGTGCCAGAAGCTGTTGACAAGGATTCCATCCCCAGATTCGGGTTTAACAAGAGGTTTGCAATTGACACATTTTGCACATCCAAAATCGGGTGATGTTTTCCGTCTCAAATGTAAAATTGAGTTTGACAAGTCCAGTTCAGTATCTGAAGTAGACAAAGCTGAAGAGACTGACAAAAGTGAGATGGATCAACAAGTAGTGGAGTGTGTCCCAACTCTGCCTACTTCCCAGTCTGATATTTAG 3660 0.4167 MQDRSTLKRPRLRATWDTMHGCQRGPMRTNYTSEQGTENSRSPFASYVCEVRAAFSAVTMTLTLNHSPMDVDGEKSYGSIKRRRGSRKRKLLVNERVEVKSVEEGFQGSWHPGTVIRCGKQKRHVKYDYILNDKASKYLVDVVCVSLVLDGIASSSDCGNEYGFIRPLPPPLEFGERDLLFGRCVDVNYKEGWWEGVIFDHFNGMEERSVLFPDLGDEMIIGTHQLRITQDWDEATENWEQRGKWTFLEVVEESERESIIAISVKQIWYDIRARKDFDDIIKHWTCNLKELWRGLVDEVVGDYYTLTLDEVFPALNFSEDFLKETSELHSVEPIDNIHYDVNEFGSDIVVTDSPMENRDTSNLLESDKICYSIIPLQEKEISILEEPLSPVQEIKPDAGEIMEARNSTERKRKRRRSGSLHWKPLVLSEVESCPDVLKQYLLGHGSKTIRELLKTKVRNHLAYLGWQIEWTDDKYFPGRGRYRYKSPDAQDQKIYSSIIQVLTHMQMESTMNIEQPQIDHDRMHTTNDTNLSYLLSDQPSNGQDVDVCSPNGEPSHAKVEIEMGFCPQAVVKYYLNASDKYWVDKGKWKLKAKKHLLAEGWTFEYPTNKRRTTLYMSPRDQCLGTLRGACRLYIKDKIPEWTNSGMIPLNVPAMNEESVGHVDSDDLFQILSQLLEKEPELLTTSPVRISTDNENHTRRGKPKASKPKHHRKGSSTLMLRSSKRVQKVSASSLSQQRPQNVISWLIDNELVMSRCKVYCYAGGRNPDVAEGRITYDGIKCSCCPKIYGIDGFVNHAGVSSDCRTSASIFLKDGRSLLDCMIKAMHNHRTREDMNTPCYALSEGENDNICSVCQFGGELILCDQCPSAFHKACLGLEDIPDGDWFCPSCRCGICGQIKIAGTEDVFFLTCIQCEHKYHVGCLKSREKDESRRYMENWLCGRECEQIYAGLQNLLGKSLMVGANNLTWTLVKFINSENHDVGTTKNDLMAEKYSKLSVALSVMHECFEPVKNPFTGRDIIDDVMFNTRSELNRLNFHGFYTILLEQNEELISVATIRVFGQKVAEVPLIGTRIQYRQLGMCRILMNELEKNLMKLGVERLVLPAVPDVLETWTKSFGFAKMTSFERSQFLDCAFLDFQETALCQKLLTRIPSPDSGLTRGLQLTHFAHPKSGDVFRLKCKIEFDKSSSVSEVDKAEETDKSEMDQQVVECVPTLPTSQSDI 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01666 1219 SMART agenet_At_2 89 157 IPR014002 -
Pste8g01666 1219 SMART agenet_At_2 177 234 IPR014002 -
Pste8g01666 1219 MobiDBLite consensus disorder prediction 683 718 - -
Pste8g01666 1219 Pfam PHD-finger 848 890 IPR019787 -
Pste8g01666 1219 CDD NAT_SF 1040 1100 - -
Pste8g01666 1219 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 984 1139 IPR000182 GO:0016747
Pste8g01666 1219 MobiDBLite consensus disorder prediction 25 39 - -
Pste8g01666 1219 Gene3D - 978 1148 - -
Pste8g01666 1219 MobiDBLite consensus disorder prediction 701 717 - -
Pste8g01666 1219 Pfam Agenet domain 95 170 IPR008395 -
Pste8g01666 1219 CDD Tudor_Agenet_AtDUF_rpt1_3 93 170 - -
Pste8g01666 1219 ProSiteProfiles Zinc finger PHD-type profile. 846 891 IPR019787 -
Pste8g01666 1219 MobiDBLite consensus disorder prediction 18 39 - -
Pste8g01666 1219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 891 945 IPR013083 -
Pste8g01666 1219 Pfam Tify domain binding domain 771 822 IPR032308 -
Pste8g01666 1219 SMART PHD_3 848 889 IPR001965 -
Pste8g01666 1219 SMART PHD_3 890 942 IPR001965 -
Pste8g01666 1219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 839 890 IPR013083 -
Pste8g01666 1219 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1030 1118 IPR016181 -
Pste8g01666 1219 SUPERFAMILY FYVE/PHD zinc finger 826 889 IPR011011 -
Pste8g01666 1219 PANTHER PHD FINGER PROTEIN 12 542 1202 IPR042163 GO:0003714|GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01666 Pste-Chr8 10565214 10572485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01666 91 490 PHD Transcription Factor Family AT5G58610 36.609 3.83e-62 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste8g01666 Agenet 4.4e-14 CL0049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01666 8 10565214 10572485 Pste8g01666 8 10565214 10572485 ECH
Pste7g01627 7 15093739 15103055 Pste8g01666 8 10565214 10572485 PCT