Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01622 TGGCTAGGGCACCACAGCTACTCAGTTCATTCATCTCAATCAGAAGCAGAGAGAATGCTATCAGGGGACATACCTCCCAACCAAACAATTTATATCAAGAATCTCAATGAGAAGATCAAGAAAGATGAGTTGAAGAGATCACTGTATTGCTTATTCTCTCAATATGGAAGAATTTTGGATGTTGTTGCTCTAAAGACACCCAAGCTTCGCGGACAGGCATGGGTTTGTTTCAGTGAAGTCACTGCTGCCAGTAATGCTGTTAGACAAATGCAAAACTTCCCTTTTTATGATAAACCTATGAGAATTCAATATGCAAAAACAAAGTCAGACTGTATTGCAAAAGAAGAAGGTAGTTATGTTCCAAGGGAAAAGAAGAAGAAACAAGAGGAGAAAGCTGAAAGAAAGCGGCGTGCTGAGGAAGCACAGCAATCTGCCGTGGCTAATGGAACACATGGTGCAAGCAATGGTGGTCCACCTGCATCATTCCGTCAGGGACCTAGTGCCCAAGAAACGACTGCCCCTAACAATATTTTGTTCATAGAGAATTTGCCTCATGAAACTACTGGTAGGATGCTTGAAATGCTCTTTGAACAATACCCTGGTTTTAAAGAAGTGCGCTTGATTGAAGCAAAGCCAGGAATTGCATTTGTTGATTTTGAAGATGAAGTGCAATCCTCAATGGCCATGCAGGCTCTTAATGGCTTTAAGATCACCCCTCAGAATCCCATGATTATAACCTTTGCTAAGAAGTAG 753 0.417 WLGHHSYSVHSSQSEAERMLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFSEVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGSYVPREKKKKQEEKAERKRRAEEAQQSAVANGTHGASNGGPPASFRQGPSAQETTAPNNILFIENLPHETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALNGFKITPQNPMIITFAKK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01622 250 MobiDBLite consensus disorder prediction 143 170 - -
Pste8g01622 250 FunFam U1 small nuclear ribonucleoprotein A 22 127 - -
Pste8g01622 250 MobiDBLite consensus disorder prediction 116 141 - -
Pste8g01622 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Pste8g01622 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 237 IPR000504 GO:0003723
Pste8g01622 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 107 IPR000504 GO:0003723
Pste8g01622 250 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 25 107 - -
Pste8g01622 250 SMART rrm1_1 29 103 IPR000504 GO:0003723
Pste8g01622 250 SMART rrm1_1 177 246 IPR000504 GO:0003723
Pste8g01622 250 CDD RRM2_U1A_like 174 246 - -
Pste8g01622 250 FunFam U2 small nuclear ribonucleoprotein B'' 167 250 - -
Pste8g01622 250 Coils Coil 122 144 - -
Pste8g01622 250 CDD RRM1_U1A_like 29 106 - -
Pste8g01622 250 Gene3D - 22 134 IPR012677 -
Pste8g01622 250 SUPERFAMILY RNA-binding domain, RBD 26 238 IPR035979 GO:0003676
Pste8g01622 250 MobiDBLite consensus disorder prediction 116 170 - -
Pste8g01622 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 250 IPR000504 GO:0003723
Pste8g01622 250 Gene3D - 166 250 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01622 Pste-Chr8 9888018 9891329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01622 1 250 Eukaryotic Initiation Factors Gene Family AT1G71770 22.656 2.69e-10 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01622 8 9888018 9891329 Pste8g01622 8 9888018 9891329 ECH