Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01604 CAGGTTTTAAAATAATACCAAATTTATTTCAGCACCTCCCATTCCAACGGTGGCCGGAAAACCTATTTGAGCAGTGCTGTCAACCAAATTTTCATCTTTCTCTCGCTATCAACTGGGAATTATTAGCTTTTGATCCCCTCTTTCTGGTGTTATGGAGATATCTTTGTTAAAGGTGCTATCTGATGCGATATCCTCGTTTTCACATTTATCATTTTCTGAAAAAATGAAGCCAGAACCTGTATCAAATTATTACCAAAAGGCGGAGAAGATGCTTAAGTTGTTGAAGCCAATTATTGATTCGACTGTTTTTTCTAATTTAGTTTCTCATGATGATCTTAGTAATCTATTTGAGGACCTTGGTCTGGCTATTGATGAGTTGAGGAACCTTATTCTGAACTGGCATCAATTATCTAGCAAATTTTACTTTGTTAGTCAAGTTGATCCCTTGATATCAACAATTCAGTCTTTGGTACTCGGCATTTTACAACAGCTGAAGGCTTCACCACAATGTCTCCCTGATAATCTGGGAAGTGAAACATCATCAACCATTAAAAGAGCTATTATGGAACAGCTGGAAGGTGTAGGACCAAGTTTGGAGGTCCAGGAAGACATTGCCAAGAATTTGGTTCTAAGGTCTAATCAAGAGATCCTTATTGAAGCTGTAGCCCTTGATAAGTTAAAGGAGAATGCTGAACAACTTGAAAATACTGCAGAAGCTGAATATATTGATCAAATGATCTCTGTTGTAAATTGTATGCATGAGCATCTTGTTATACTTAAGCAAGTGCAGAGCTCTATACCAGTGTCAGTGCCTGCTGATTTTTGCTGCCCTCTCTCTTTGGAGTTGATGACAGATCCAGTCATTGTGGCATCGGGACAAACATATGAGCGGGCTTTCATCAAGAATTGGATTGATCTAGGGCTTACTGTTTGTCCCAAGACACGCCAGACTCTGGTTCACACCAATCTAATACCTAACTACACTGTGAAGGCATTGATTGCTAGCTGGTGTGAATTAAATGATGTGAAGCTTGTTGAACCCATTAAGTCCAAAATCTTAAATCAACCATCTCCCTTTCATGGGTCTATGGAGTCTGGTTTGGCAAAGGATTCTCCTGTTATAACTAGTGGTGAAAATCATCAGGAACAAACATCAACATTGCATCCCTCTTCAACTCATGGTGGTTCCTTAAATGGCATGGTTAATGAGCTGCATGTGGATCTTGAAAGAATATCACTCGCATGTTCAGATGAAGGGTCTGCTAGCTCTGGTGAAGGAAGTGTGGATTCAGTTGACCAATCACTAATGTCGCCATCCAGAAGGGAATCCTCCAATGCCTTGAGCTCAGAACAATCTCAACCTGATGTTAGAACTACTTCTGATAACAAGAATACTCCTTTGCTGTCAACCAGTTCAGCCCACTGTAAAGATTCTTCTGGGGAATTGAATTCAGGTCCAGATGCTGTTGCCATGTCAACTCGGCATAGAGAGCTTGAGTTTTCACCTCAATTGCTGGGGCGAAGGTCTCGAAGCCAAACTATATGGCAACGGTCATCTGAGTGGCTTGTTCCTAGGGTAGTGTCTAATCTTGTTGAAACAAGAGCTGATCTTTCTGCTGCTGAAACCCTGGTTCAGAAATTGGTCGAGCAGTTAAAGAGCGACTCTCTTGATACTAAGAGAGAGGCAACATCAGAACTCCGCCTTCTTGCTAGGCATAATATGGATAACCGAATTATAATTTCAAATTGTGGAGCCATTAGCTTATTAGTTAATTTACTTCAATCAACAGATACTACGATCCAGGAAAATTCTGTTACAGCACTCCTTAACTTATCAATCAATGATAACAACAAAGCAGCTATTGCAAATGCTGGTGCAATAGAACCTCTTATTCATGTCCTTAAGACAGGGAGTCCAGAAGCCAAGGAGAACTCAGCTGCCACTCTTTTCAGCCTCTCAGTTACTGAGGAAAACAAGATCAGGATAGGAAGGTCTGGGGCAATTAGACCACTGGTTGATTTATTAGGGAATGGAACCCCTAGGGGGAAGAAAGATGCAGCCACTGCTTTGTTTAATTTATCAATATATCATGAAAACAAGAATCGGATTGTGCAAGCCGGAGCTGTGAAACACCTTCTAGAGTTAATGGAACCTGCAGTTGCATTGGTTGATAAGGCAGTGGCTGTTTTGGCAAATCTTGCTACAATACCAGAAGGGAAAGCAGCAATTGGTTCGCAAGGTGGGATTCCTGTTTTGGTGGAGGTTATTGAGTTGGGTTCTGCAAGAGGAAAGGAGAACGCAGCAGCGGCTCTTCTACATCTATGCTCAGACAATCACAGATACTTAAACATGGTGCTTCAAGAAGGAGCTGCCTTGGCTCTCCTTAATCAATTTAGAAGCCAAAGACATGGTTCTGGGAGGGCTTGATCTCAATTTGCCTACCTCTTAAACCTTCCAAAGATTTTGAATCAACTTACAAAGATGTAAGAATTATACATTAGATTGTACACACAATATGCAGAAAGGTGTTTTTTTATGGTTTACACATGTATGTAAGGGGAGAGAAATATGTATGAAAGAGGAGGATTGATTGTGTCCTCATGTGACACACCAGTGAGATGTTAAGAAAAATTATTTGGTTTTAGAAACAAAAAATTCTGGTTCTTGTTACTGGATAAATATTTGGTTTTAGAAGACAAGGATCTGGATATTGTCATCATTCTTAGATCATAGTATATAAAAAGCATTTGAAGAAGAAATCAT 2764 0.4012 MEISLLKVLSDAISSFSHLSFSEKMKPEPVSNYYQKAEKMLKLLKPIIDSTVFSNLVSHDDLSNLFEDLGLAIDELRNLILNWHQLSSKFYFVSQVDPLISTIQSLVLGILQQLKASPQCLPDNLGSETSSTIKRAIMEQLEGVGPSLEVQEDIAKNLVLRSNQEILIEAVALDKLKENAEQLENTAEAEYIDQMISVVNCMHEHLVILKQVQSSIPVSVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTNLIPNYTVKALIASWCELNDVKLVEPIKSKILNQPSPFHGSMESGLAKDSPVITSGENHQEQTSTLHPSSTHGGSLNGMVNELHVDLERISLACSDEGSASSGEGSVDSVDQSLMSPSRRESSNALSSEQSQPDVRTTSDNKNTPLLSTSSAHCKDSSGELNSGPDAVAMSTRHRELEFSPQLLGRRSRSQTIWQRSSEWLVPRVVSNLVETRADLSAAETLVQKLVEQLKSDSLDTKREATSELRLLARHNMDNRIIISNCGAISLLVNLLQSTDTTIQENSVTALLNLSINDNNKAAIANAGAIEPLIHVLKTGSPEAKENSAATLFSLSVTEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKNRIVQAGAVKHLLELMEPAVALVDKAVAVLANLATIPEGKAAIGSQGGIPVLVEVIELGSARGKENAAAALLHLCSDNHRYLNMVLQEGAALALLNQFRSQRHGSGRA 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01604 758 FunFam RING-type E3 ubiquitin transferase 219 294 - -
Pste8g01604 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 616 658 IPR000225 GO:0005515
Pste8g01604 758 Coils Coil 166 193 - -
Pste8g01604 758 MobiDBLite consensus disorder prediction 367 437 - -
Pste8g01604 758 SUPERFAMILY ARM repeat 491 745 IPR016024 -
Pste8g01604 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 575 617 IPR000225 GO:0005515
Pste8g01604 758 MobiDBLite consensus disorder prediction 367 429 - -
Pste8g01604 758 SUPERFAMILY RING/U-box 213 297 - -
Pste8g01604 758 Gene3D - 564 670 IPR011989 -
Pste8g01604 758 Coils Coil 480 500 - -
Pste8g01604 758 MobiDBLite consensus disorder prediction 322 348 - -
Pste8g01604 758 Gene3D - 448 563 IPR011989 -
Pste8g01604 758 SMART arm_5 646 685 IPR000225 GO:0005515
Pste8g01604 758 SMART arm_5 686 726 IPR000225 GO:0005515
Pste8g01604 758 SMART arm_5 605 645 IPR000225 GO:0005515
Pste8g01604 758 SMART arm_5 564 604 IPR000225 GO:0005515
Pste8g01604 758 SMART arm_5 523 563 IPR000225 GO:0005515
Pste8g01604 758 SMART arm_5 482 521 IPR000225 GO:0005515
Pste8g01604 758 Gene3D - 671 753 IPR011989 -
Pste8g01604 758 PANTHER U BOX DOMAIN-CONTAINING 29 747 - -
Pste8g01604 758 SMART Ubox_2 223 286 IPR003613 GO:0004842|GO:0016567
Pste8g01604 758 FunFam RING-type E3 ubiquitin transferase 478 758 - -
Pste8g01604 758 Pfam Armadillo/beta-catenin-like repeat 525 562 IPR000225 GO:0005515
Pste8g01604 758 Pfam Armadillo/beta-catenin-like repeat 606 644 IPR000225 GO:0005515
Pste8g01604 758 Pfam Armadillo/beta-catenin-like repeat 564 603 IPR000225 GO:0005515
Pste8g01604 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 657 698 IPR000225 GO:0005515
Pste8g01604 758 MobiDBLite consensus disorder prediction 305 349 - -
Pste8g01604 758 CDD RING-Ubox_PUB 221 273 IPR045210 -
Pste8g01604 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 293 IPR013083 -
Pste8g01604 758 Pfam U-box domain 220 289 IPR003613 GO:0004842|GO:0016567
Pste8g01604 758 ProSiteProfiles U-box domain profile. 219 293 IPR003613 GO:0004842|GO:0016567
Pste8g01604 758 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 576 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01604 Pste-Chr8 9612249 9623222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01604 180 758 U-box Gene Family AT2G23140 57.524 0.0 644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01753 7 16278729 16282703 Pste8g01604 8 9612249 9623222 PCT