LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g01595	GAACTTCCAATGGCACTAATCATTCTCATTTTTCTCTTCATTGAAATGCAATTCCAGGGTGCCACTTCTGACTATGGTGGTTGCAGGGTGGTCATGCTACTTTCTATGGTGGTGGTGATGCTTCTGGTACAATGGAATAGAGTTGCTCATATAGCTAGGGGGGAACCTATTATTGGATGGTGTGGTCATTTCAAAAGAGGTGCATGTGGTTATGGGAATTTGTACAGTCAGGGATATGGTACCAACACTGCAACTCTAAGCACTGCTTTGTTCAACAATGGATTGAGTTGTGGAGCTTGCTATGAAATGAGGTGTGATGATGATCCAAGATGGTGCAAGCCTGGCACCATTGTTGTTACTGCTACAAACTTCTGTCCTCCAAACTTTGCTTTGCCCAACAATAATGGTGGTTGGTGCAACCCTCCTCTACAACACTTCGATATGGCAGAACCAGCGTTCCTTCAAATTGCTCAATATAGAGCTGGAATTGTGCCTGTGGCTTTTAGAAGAGTGGCTTGTGTGAAAAAGGGAGGAATAAGGTTCACAATTAATGGCCACTCTTACTTCAACTTGGTTTTGATCACCAACGTGGCGGTCACTGCCAGTGACGGTAGAACTGTCACAAGCTACGATGTGGCACCATCTAACTGGCAGTTTGGTCAGACCTTCCAAGGTGCTCAGTTTTAG	687	0.4483	ELPMALIILIFLFIEMQFQGATSDYGGCRVVMLLSMVVVMLLVQWNRVAHIARGEPIIGWCGHFKRGACGYGNLYSQGYGTNTATLSTALFNNGLSCGACYEMRCDDDPRWCKPGTIVVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVAFRRVACVKKGGIRFTINGHSYFNLVLITNVAVTASDGRTVTSYDVAPSNWQFGQTFQGAQF	228

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g01595	228	CDD	DPBB_EXPA_N	67	173	-	-
	Pste8g01595	228	Gene3D	-	52	173	IPR036908	-
	Pste8g01595	228	SUPERFAMILY	Barwin-like endoglucanases	62	196	IPR036908	-
	Pste8g01595	228	SMART	dpbb_1	83	168	IPR007112	-
	Pste8g01595	228	PRINTS	Expansin signature	136	153	IPR002963	GO:0009664
	Pste8g01595	228	PRINTS	Expansin signature	105	116	IPR002963	GO:0009664
	Pste8g01595	228	PRINTS	Expansin signature	117	127	IPR002963	GO:0009664
	Pste8g01595	228	PRINTS	Expansin signature	177	189	IPR002963	GO:0009664
	Pste8g01595	228	PRINTS	Expansin signature	189	210	IPR002963	GO:0009664
	Pste8g01595	228	PRINTS	Expansin signature	78	92	IPR002963	GO:0009664
	Pste8g01595	228	PRINTS	Expansin signature	153	166	IPR002963	GO:0009664
	Pste8g01595	228	Pfam	Lytic transglycolase	83	167	IPR009009	-
	Pste8g01595	228	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	184	225	IPR007117	-
	Pste8g01595	228	PRINTS	Expansin/Lol pI family signature	87	105	IPR007118	GO:0005576
	Pste8g01595	228	PRINTS	Expansin/Lol pI family signature	65	83	IPR007118	GO:0005576
	Pste8g01595	228	PRINTS	Expansin/Lol pI family signature	161	177	IPR007118	GO:0005576
	Pste8g01595	228	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	66	178	IPR007112	-
	Pste8g01595	228	PANTHER	EXPANSIN-A15	198	228	IPR002963	GO:0009664

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g01595	Pste-Chr8	9413371	9415103	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g01595	67	228	Expansin Gene Family	AT2G40610	66.829	1.49e-94	275

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste8g01595	8	9413371	9415103	Pste8g01595	8	9413371	9415103	ECH
	Pste7g01773	7	16400823	16403436	Pste8g01595	8	9413371	9415103	ECH
	Pste7g01773	7	16400823	16403436	Pste8g01595	8	9413371	9415103	PCT