LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g01593	TACCTAGTTGGTACATATAAACTCGTAATTAGTCACTCTGTTTTCCTTAGATTTGCCTATGCCAATTCAATCTTCTGTGATAAATTTCACCACCATCAAACTGGTTGGAGAGAATGCAGCTTTTGCAACAAGCGTCTCCATTGTGGATGCATAGTATCAAGGTCTTTGTTTCAGTACCTTGATTTTGGCGGTATAGGTTGTGTTACTTGTGTGAAGACTTACCTACTTTCTTTGATACAGGATCTTGAAACCCCTAATCAGCCGGTTAGATCAATAAAAAATAATCCAAGTGATCATCATATAGAACATATTGATGGTAGACTATTGATGGATGATGTTGGCAAAGGAAAATTTATTCAATCATGCAAAATTGATAAGACTAGTGAATCCCACCATTGGCATCAAGATGAGGGAAATGACATAGATTCATACATTGGTCCAAACAATCAAGGAGATAGAAGATTATCAAATTTGGTGAAACCGTGTAGGCATTCATTGGCTTTTCCTACATTAAAAAATAATAGACCAACATGGGAGACCAAAACTATGCATAATTCAAGTTCATTGAATATTTCACTAGGAACTTCATCAGGAAATTCTATCTTCCCTTTTGCTTTAAATGTTGTAGAAAGAAGACTTGAGGGCAAATCATCATCTTCTCCCTTTCATCAAGGGCAAATATTTCTCCCCACATTTCCTAAACCATCATTAAGTGAGATAACCATGAATATGGAAACAAGTAAAGACATGATTTCTCATGAACGTGTTGCTCGACCACCTACTGATGGGAAAGGCAAGAATTTTTTAAAGTCTACTATAGTGCCATTATTTGAGAAGGTATTAAGTGCAAGTGATGCTGGTAGAATTGGCCGTATTGTTCTCCCAAAATCTTGTGCTGAGGCTTACTTTCCTCCTATTTCACAGCCAGAAGGTCTACCTTTGCAAATCAAAGATATGAAAGGAAAAGAGTGGATATTTCAGTTTAGATTTTGGCCTAATAATAATAGTAGGATGTATGTATTGGAAGGAGTAACCCCGTGCATGCAAGAGTTACAATTAAATGCTGGTGACATTGTAACATTTAGTCGGATAGATCCTGAAGGCAAATTTCTCATGGGTTTCAGAAGGGCATCAAATTCTATAAATACTCAGGATGTCTCTACTTTTGCTTATTCCAATGGTTTTTTAACAAAGGAAACAACCATTTCTACTGAAGGTAAAAATATGGACTCAAGAAATAGTAACCCTGATATTTTCCTAACAAGGAAAGAGAATTATAAACATTGCTTAAACAGAAAGAATTGTCAAATGGTAAACAACAATTTGTTGCGACAACCAATTTCAATTTTGGAGAAAACTCAAAATATTGGACCTAAGAGTAAAAGGTTGCTCATAGATAAAGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCACAAGACATGTTTCGTCCACCACCTTGTATTAACCCAAGTATTGTAACAATTGATGATAGAGAATTTGAGGAGTATGAGATACCCCCAGTTTTTGGAGATGGGACTACAAACAATTCTCACGCATCTAGGCCTTTGAGCTATGCATCAGAGGAAATGAGTCGAAAGGAATTAGAAATGATTTCGGTAACCAGCAAAGATTCTAAAAAGCGAAGAATGATAGAAAAACCAGACTCAAGCGAAGAACATGAGCCTTTTAGCAGTTTAGCAATTTTGGGTGGTGATGATGATCTTGTTGACCATGCAGACTCATCAGCAGGAGCCTCCAACAAACATCCAAGGCACCGTCAAGGATGCACTTGCATTGTTTGCATTGGAAAAGGGAAACATAAGTTAACATGCACTTGCCTTGCCTGCATGACTGCAAGACAACCATCCAACCCCATTATGATGCGTAAGAAGCAATACCAAACTGAACTTGAAGCAGATGCTATCCCAAAAGATCATATTCATCACAGGGATGAGGGAGATACCAATGGTGCTTCAATAGATGGTCGTCTTAAGGTGATGGATGAACTCAATGCTAGAGACATTGACCTCAACACTCATCCTCATGATGAAGAAGAGCGACATGTTCTTGATGTGGAGTGGGAGACTTTTTTGTTGAGATTAAGGAGGAGGAGAGGGGCTCTTTCTGTGAATTCTGCT	2145	0.379	YLVGTYKLVISHSVFLRFAYANSIFCDKFHHHQTGWRECSFCNKRLHCGCIVSRSLFQYLDFGGIGCVTCVKTYLLSLIQDLETPNQPVRSIKNNPSDHHIEHIDGRLLMDDVGKGKFIQSCKIDKTSESHHWHQDEGNDIDSYIGPNNQGDRRLSNLVKPCRHSLAFPTLKNNRPTWETKTMHNSSSLNISLGTSSGNSIFPFALNVVERRLEGKSSSSPFHQGQIFLPTFPKPSLSEITMNMETSKDMISHERVARPPTDGKGKNFLKSTIVPLFEKVLSASDAGRIGRIVLPKSCAEAYFPPISQPEGLPLQIKDMKGKEWIFQFRFWPNNNSRMYVLEGVTPCMQELQLNAGDIVTFSRIDPEGKFLMGFRRASNSINTQDVSTFAYSNGFLTKETTISTEGKNMDSRNSNPDIFLTRKENYKHCLNRKNCQMVNNNLLRQPISILEKTQNIGPKSKRLLIDKEDAMELRLTWEEAQDMFRPPPCINPSIVTIDDREFEEYEIPPVFGDGTTNNSHASRPLSYASEEMSRKELEMISVTSKDSKKRRMIEKPDSSEEHEPFSSLAILGGDDDLVDHADSSAGASNKHPRHRQGCTCIVCIGKGKHKLTCTCLACMTARQPSNPIMMRKKQYQTELEADAIPKDHIHHRDEGDTNGASIDGRLKVMDELNARDIDLNTHPHDEEERHVLDVEWETFLLRLRRRRGALSVNSA	715

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pste8g01593	715	Gene3D	-	261	382	IPR015300	-
Pste8g01593	715	MobiDBLite	consensus disorder prediction	544	564	-	-
Pste8g01593	715	SUPERFAMILY	DNA-binding pseudobarrel domain	274	376	IPR015300	-
Pste8g01593	715	Pfam	B3 DNA binding domain	277	377	IPR003340	GO:0003677
Pste8g01593	715	SMART	B3_2	277	378	IPR003340	GO:0003677
Pste8g01593	715	ProSiteProfiles	B3 DNA-binding domain profile.	277	378	IPR003340	GO:0003677
Pste8g01593	715	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS07G0563300	19	690	-	-
Pste8g01593	715	CDD	B3_DNA	275	376	IPR003340	GO:0003677
Pste8g01593	715	MobiDBLite	consensus disorder prediction	544	562	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g01593	Pste-Chr8	9372901	9385227	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g01593	19	711	B3 DNA Binding Superfamily	AT4G32010	36.649	1.42e-137	421

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Pste8g01593		B3	3.2e-15	CL0405

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste8g01593	8	9372901	9385227	Pste8g01593	8	9372901	9385227	ECH
	Pste7g01819	7	16770641	16778338	Pste8g01593	8	9372901	9385227	PCT

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