Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01588 ATGTCCGTTCACTCAACACCCAAGCTCCACCCCATGAACCTCGCCACCCCAAGTTCCCGTTTTGAGGACGACCCACCATGCAAAACCAAGACCAGAACCCAAAGGAGGCTCCTTCGGATCATAATCACCGACCACGACGCCACTGATTCTGACTCCTCCGACGAAGAACAACCAAACAACCCAACAAAGACTAAAAGAGTGAAGAGACAAATTACCCAAATCAACATGCAACTCCCTCTTTCAGATTCTTTTTCTTCTTCATATTCTTCTGCTTCCACTTCTTGTTCCTCTGAGAAGTGCAAGAGACCTAAAAAAACCCCGCCGTCCACCGCCGTGGTCCGCCGCCGCAGCAAGTTCCGCGGCGTCCGGCAGCGGCCGTGGGGACGCTGGGCCGCAGAGATCCGCGACCCCACCCGCCGGAAACGCCTCTGGCTCGGAACCTTCGACACTGCGGAGGAAGCCGCCACGGAGTACGACAAAGCAGCCGTGAAACTCAAGGGCCCCAACGCCGTCACCAACTTCCCCCTAAAGTCGCCACCAACGGCGTCATCTCCGGTCGCCACCGTCGACAGCCTCAGCACCGACGGCGGCGCGTCGTACTCCGATCTAGTGGCCTCGCCAACATCTGTTTTGGCCTACAACTGCGACTCGATGCCGTTCGACGGTTTCCGTTACGTTGACGTGGATGCGTTGGGATTCCACATCGACGCGCCATTAAGTTTGCCCGACGTTAACGGTTTGCTGACGTGTCATCACGGCAAAAACGATGAGACGTTTGATGAATTCGACCTTGACGAGTTCATGACATGGCCTTACTAA 819 0.5592 MSVHSTPKLHPMNLATPSSRFEDDPPCKTKTRTQRRLLRIIITDHDATDSDSSDEEQPNNPTKTKRVKRQITQINMQLPLSDSFSSSYSSASTSCSSEKCKRPKKTPPSTAVVRRRSKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTFDTAEEAATEYDKAAVKLKGPNAVTNFPLKSPPTASSPVATVDSLSTDGGASYSDLVASPTSVLAYNCDSMPFDGFRYVDVDALGFHIDAPLSLPDVNGLLTCHHGKNDETFDEFDLDEFMTWPY 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01588 272 MobiDBLite consensus disorder prediction 1 69 - -
Pste8g01588 272 FunFam Ethylene-responsive transcription factor 2 117 177 - -
Pste8g01588 272 MobiDBLite consensus disorder prediction 23 48 - -
Pste8g01588 272 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Pste8g01588 272 Pfam AP2 domain 117 167 IPR001471 GO:0003700|GO:0006355
Pste8g01588 272 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Pste8g01588 272 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Pste8g01588 272 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Pste8g01588 272 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 185 - -
Pste8g01588 272 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Pste8g01588 272 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Pste8g01588 272 MobiDBLite consensus disorder prediction 92 118 - -
Pste8g01588 272 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Pste8g01588 272 PIRSF PTI6 7 272 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01588 Pste-Chr8 9246678 9247496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01588 28 215 AP2-EREBP Transcription Factor Family AT4G27950 44.041 3.24e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste8g01588 AP2 1.4e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01588 8 9246678 9247496 Pste8g01588 8 9246678 9247496 ECH