Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01576 GAAGAAGTTCAGTTGAGTCCACTGCGCCTTCCTCTCCTATTCGTATATGCGCTAGCAGATGGCAAAGGGTTGCATCAACAACACTTATGAAGAGGCTAGAAAACAAAGGCTTGAAGAAAACAAGAAGAGGTTTCAGGATTTGGGAATTTCAAGGATTTCAAAAAATTTGACTGAAGTCACAAGTTCTGCAAAGAAGAAGACGCCGCATCATCTTCCTAAACTGACACCAAAGAAGACAAATATTAAAGTTGAAGTGGTACCTAGACGATCATCTCGTGTGCGAAACCCAGTTTGTTCATACCGTGAAGATGTGAGCATAGATCTTCCACCTTTGCGGAAGAGGTCAAGTTATGCTGCAAGGCCATTAGATGAAATCAAAGAAGCAACGGAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCCGAGGCACTCCAAATCAATTTGAACTCTTCAAATCCATCATTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGCTGCTTTTGGTTGGGTCTTCCTAATAAATTTTGTGAGAAACATCTTCCGAAAACCATATATAACATGGTTTTAGAAGATGAAAATAGCTCAGAATATGAGGCTGTTTACATTGGCAACCGAACTGGGCTTAGTGGTGGCTGGCGAGCATTTGCATTGGATCATAAACTGGATGATGCCTCGCAAGATGTTAGAATAGACAATATGTTCAGGCTTTGGGCTTTTCTTGTTACAATGACTAGAACTTCTGATAAGGATATCTATCACATTGTTTGTATTAATGAAATGAGGACGAGCATTAAAGAAATGGCAAGGTTGCTGCCCATTTACTTGGAGATCATTGGTTTAAATCCTACAGCCTCTGCCTTTGCAGGGATTTATATTGTCAGAGCATTTCCAGATTCAGTTGAAGAAAAGGGAAAGGAAATTTTAGAGGAAGAAGGAAATATGCGTGAAACCAAATCACCAAAAGCTGCTTGTAATCTTGAATCAGAATCCAAGGCAAAAAAGCCAAACCTGGCTGCTAAATCAGACAGTTCTCAGGAGCATCTACCAGATAGCAGCATTGATAATGAAGTCAAACGACAGGGGGTAAATCCAACTAAGAAAACTAAATTTTCTCATGGAAAAATGCAAAAGAATGGGTTTGTTCAGGACTCTGAGAGCAAGTTGGAGAAAGTTGAACTAGTTGAAGAAGCAAGCAAATGCGTGTCACAGAAGGCTAGAAAAAAACCAGCTCGGAAGTTGTTCAGAAAGAAAGCATAGTCTTGAAGCTAATGAATGGTAAAAAGTTGTTATAGAAAATGGAAATATGTGTACATTTAAGACGGGTGGAGTACATTGTGGTAGTAGACAATTTTTTTATGTTGTGGATTAATGGTAACTGCTTTTACAAAACATTGATGAAATATTTAAAAACCAC 1415 0.3908 MAKGCINNTYEEARKQRLEENKKRFQDLGISRISKNLTEVTSSAKKKTPHHLPKLTPKKTNIKVEVVPRRSSRVRNPVCSYREDVSIDLPPLRKRSSYAARPLDEIKEATEEERLCALEAAEALQINLNSSNPSFIKSMVRSHVYSCFWLGLPNKFCEKHLPKTIYNMVLEDENSSEYEAVYIGNRTGLSGGWRAFALDHKLDDASQDVRIDNMFRLWAFLVTMTRTSDKDIYHIVCINEMRTSIKEMARLLPIYLEIIGLNPTASAFAGIYIVRAFPDSVEEKGKEILEEEGNMRETKSPKAACNLESESKAKKPNLAAKSDSSQEHLPDSSIDNEVKRQGVNPTKKTKFSHGKMQKNGFVQDSESKLEKVELVEEASKCVSQKARKKPARKLFRKKA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01576 399 Gene3D - 109 209 IPR015300 -
Pste8g01576 399 MobiDBLite consensus disorder prediction 379 399 - -
Pste8g01576 399 MobiDBLite consensus disorder prediction 336 363 - -
Pste8g01576 399 Pfam B3 DNA binding domain 135 204 IPR003340 GO:0003677
Pste8g01576 399 MobiDBLite consensus disorder prediction 385 399 - -
Pste8g01576 399 CDD B3_DNA 133 202 IPR003340 GO:0003677
Pste8g01576 399 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 39 203 IPR044837 -
Pste8g01576 399 SUPERFAMILY DNA-binding pseudobarrel domain 130 203 IPR015300 -
Pste8g01576 399 SMART B3_2 135 228 IPR003340 GO:0003677
Pste8g01576 399 MobiDBLite consensus disorder prediction 289 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01576 Pste-Chr8 9090734 9096439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01576 10 205 B3 DNA Binding Superfamily AT5G58280 48.485 1.88e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste8g01576 B3 1.1e-09 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01576 8 9090734 9096439 Pste8g01576 8 9090734 9096439 ECH