Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01553 CCATGTCCAGCTTGGTCGGGACCCCCTTATATATGGCAAACACCCTTCCTTTACGCTCTCTCTCTCCACTGTGCGTTTCAAACCCAAAAATCCTCACTTGGGTCACAATCTGAAAGTGATAGGCCACAAAAGAGGGCCTTTACTTCCATACACACTCACTTCTGCCTCCTTCCTTCATTTTTTTCATTTTTCATTTCTTCTTTTTCCTCTTCTTCTGTTACTTTCATGGCCATCTCGGGGAACGTTCCACCCTCGCTGTTGCTGCTTGCTTCCAATTGGGTTCCCCTTCTGTTGGCTTTTTTTGTGGGCATGGAGTGCATTGGCAAGTGGGACGGGAACATGGGGGAATGCAATAATGATAATTATATCAATAATGGGTTTGGGGAAATTGAGGAAGGAGGAAAAAGGGGAAAGCTTGATATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGTCCCTTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTATTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGAGAAGTTGATGGTCACATACCCAATTACCCGAGTTTGCCACCCCAGTTGATTTGCCAGCTTCACAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACGCTACAGCCGCTGACTCCGCAAGAGCAAAAGGATACGTTTCTTCCCATGGAGTTGGGCATTCCAAGTAAGCAGCCCTCAAATTATTTTTGCAAGACGTTAACGGCAAGTGACACCAGTACCCATGGAGGGTTCTCTGTTCCTCGTCGAGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCGCCTGCGCAAGAATTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACATCTTCTTACAACAGGCTGGAGCGTATTTGTTAGTGCCAAAAGACTAGTGGCTGGAGATTCCGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATTCGTCGAGCCAATCGACCACAAACTGTCATGCCATCCTCAGTTCTATCCAGTGATAGTATGCACATTGGGCTTCTTGCAGCTGCTGCTCATGCTGCAGCAACTAATAGCTGTTTTACAGTATTCTATAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAGGCTGTGTACCATACACGTGTTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACCGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATCTGGATCCTGTTCGATGGCCGAATTCTCATTGGCGATCTGTTAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAACCACGGGTATCATTGTGGGAAATTGAGCCTTTAACAACGTTTCCGATGTATCCATCTCTATTTCCCCTCAGATTGAAACGCCCATGGCATCCTGGCACCTCTTCTTTTCATGATGGCAGAGATGAAGCAACTAATGGGCTAATGTGGCTGAGGAGTGGACCTGGGGACCAAGCTCTCAATTCCCTTAATTTTCAAGGTTCTGGCTTGTTGCCATGGATGCAGCAGAGAATGGATCCCACTTTGCTTGGAAATGATCATAGTCAGCAGTACCAAGCCATGTTTGCATCTGGTTTGCAGAATTTAGGGAGTGGAGATCTACTGAGACAACAAATGATGAGTTTTCAACAGCCTTTCAATTATCTTCAACAGTCAGGGAACCCCAATCCTCATTTGCAGCTTCAGCAACCACAAGCAATCCAGCAATCTGTATCTTCTAATAATATTCTACAACCACAAGCTCAGGTATTGGCTGAGAACCTGTCTCAGCACCTCCTTCAGAAATCACACAACAATAGAGATGACCAAACACAGCAGCAGCACACTTATCAAGACACAGTTTTACTACAAAGTGATCAGCTCCATCAGAGGCAACACTCCAGTTTACCTTCACCATCATATTCAAAACCAGATTTCTTAGATTCAAGCATGAAGTTCTCTGCTTCAGTTTCACCAGGACAAAACATGCTTAGTTCACTTTGTCCTGAAGGGAGTGGCAATCTCTTGAATTTATCAAGAAGTGGTCAGTCCATGTTGACTGAACAGTTACCTCAACAATCATGGGCCCCAAAGTTCTCTCCGTTGCAGGTTAATTCTTTCAGCAACTCAATCTCACATGTGCAGTATTCTGGAAAAGACACTGCCATGGTTCAACCACATTGTAACTCAGACACCCAAAATTCTATTCTATTTGGTGTCAACATTGATTCATCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACTGCATCAGCTGATACTGATGCAACAGCAATGCCATTAGGAGAGTCTGGATTCCAGGCTCCTCTATATCCCTGCGTGCAAGATTCAGCAGAGTTGTTGCAAAGTGCAGGGCAAGTTGACCCTCAGAACCAGACACGAACATTTGTCAAGGTTTACAAATCAGGGTCGGTAGGGCGCTCACTTGACATCTCCCGGTTCAGCAGTTATCATGAGCTGCGGGAGGAGTTGGCGCAGATGTTTGGTATTGAGGGAAAATTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGATGACCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATCCAGAAAATGGGAGAACAGGCCGTGGAATCCCTTGGTCCCAGTTCAGGACAGAGGCTGAATAGCACTGGTGCTGATTCTCATGAAATTGTTTCTGGACTTCCATCAATAGGCTCCCTTGAATACTGAGGGTATTTTAAAATTTGTTCTCGGGTCCTGCGGTTAAGAAGACTAAGACTATTGCAACACATGTTTAGTACTTCTGTTTGAACACTACTTTTCGACCTTGCATATCTGAATCAATATATACTGTATTGTCTATTTTCACTTTAAACACCGTTATTATTTCGTAGAGGGTTGTTGAGATTTTCAGGACAAAACAATCTCTCTCTCTCTATATATATATATTTATGAGAAACGTAGGACAAACTTTTGTGCCAATTTGTAACGTGTTCTGAAAGCTAGAGACAGTGTTACTTCGATTGTAGTGATTAATCACTTG 3265 0.4432 PCPAWSGPPYIWQTPFLYALSLHCAFQTQKSSLGSQSESDRPQKRAFTSIHTHFCLLPSFFSFFISSFSSSSVTFMAISGNVPPSLLLLASNWVPLLLAFFVGMECIGKWDGNMGECNNDNYINNGFGEIEEGGKRGKLDMKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFHDGRDEATNGLMWLRSGPGDQALNSLNFQGSGLLPWMQQRMDPTLLGNDHSQQYQAMFASGLQNLGSGDLLRQQMMSFQQPFNYLQQSGNPNPHLQLQQPQAIQQSVSSNNILQPQAQVLAENLSQHLLQKSHNNRDDQTQQQHTYQDTVLLQSDQLHQRQHSSLPSPSYSKPDFLDSSMKFSASVSPGQNMLSSLCPEGSGNLLNLSRSGQSMLTEQLPQQSWAPKFSPLQVNSFSNSISHVQYSGKDTAMVQPHCNSDTQNSILFGVNIDSSGLLLPTTVPRYTTASADTDATAMPLGESGFQAPLYPCVQDSAELLQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLGPSSGQRLNSTGADSHEIVSGLPSIGSLEY 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01553 983 Gene3D - 853 946 - -
Pste8g01553 983 SMART B3_2 268 370 IPR003340 GO:0003677
Pste8g01553 983 SUPERFAMILY CAD & PB1 domains 855 931 - -
Pste8g01553 983 MobiDBLite consensus disorder prediction 950 969 - -
Pste8g01553 983 Pfam Auxin response factor 394 477 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste8g01553 983 Pfam AUX/IAA family 853 941 IPR033389 -
Pste8g01553 983 MobiDBLite consensus disorder prediction 682 701 - -
Pste8g01553 983 FunFam Auxin response factor 432 504 - -
Pste8g01553 983 CDD B3_DNA 267 368 IPR003340 GO:0003677
Pste8g01553 983 Gene3D - 266 369 IPR015300 -
Pste8g01553 983 Pfam B3 DNA binding domain 268 369 IPR003340 GO:0003677
Pste8g01553 983 FunFam Auxin response factor 266 370 - -
Pste8g01553 983 Gene3D - 432 504 - -
Pste8g01553 983 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 157 946 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste8g01553 983 ProSiteProfiles B3 DNA-binding domain profile. 268 370 IPR003340 GO:0003677
Pste8g01553 983 ProSiteProfiles PB1 domain profile. 857 941 IPR000270 GO:0005515
Pste8g01553 983 SUPERFAMILY DNA-binding pseudobarrel domain 252 397 IPR015300 -
Pste8g01553 983 FunFam Auxin response factor 852 946 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01553 Pste-Chr8 8829234 8840515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01553 238 954 B3 DNA Binding Superfamily AT5G37020 68.269 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste8g01553 AUX_IAA 1.1e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01553 8 8829234 8840515 Pste8g01553 8 8829234 8840515 ECH
Pste7g01893 7 17308896 17316884 Pste8g01553 8 8829234 8840515 PCT