Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01544 GGTTTTTGGTAGGAGAAGATGGAGCGGGAAAAAGAAAACCTTGAAAGCTTGTTATCGTGGGCAGCACAGCTTGGAATATCAGACTCAACGACACGCACCAACCAACCTCAACACTCGCTTTCCTCATGTTTGGGTTCTTCTCTCTGTGTCTCTCATTTTCCTCACTCTGGCGGAAGAGGTTTGGGTGCTGTAAGAGACATTAAGAAGGGAGAAGCTGTTCTCAGAGTTCCAAAATCCGCTTTAATTACACGAGAGAGTGTCATGGAAGATAAAATGCTCTGTGTTGCTGTCAGTAGACACGCTTCTCTCTCCTCAGTTCAGATATTGGTTGTTTGCTTGTTGTATGAAATGGGTAAAGGGAAGACATCAAGGTGGCATCCTTACCTCATGAATTTGCCGCACACTTATGACATTCTAGCCATGTTTGGTGAATTTGAGAAGCGTGCTCTGCAAGTCGATGAGGCGATATGGGGCACGGAAAAAGCTACACTAAAAGCCAAATCTGAGTGGAAAGAAGCTCATGCTTTGATGGAAGATCTAATGTTTAAGCCCCAGTTTTTAAAATTTAAAGCTTGGGTTTGGGCTGCTGCAACGATATCTTCTCGGACATTGCATATACCATGGGATGAAGCTGGGTGTTTATGCCCCGTGGGTGATTTGTTTAATTATGATGCCCCTGGAGAGGAGCCATCTGGCATTGAGGATTCAGAGCATTTGCTATCTAACACTTCTAACCCTGATACTATCTTATTGAGTGGAGACAAGAATATAATGGTAGATGCTGACCTGCTTGATTCTCATTCTCAGAGATTAACAGATGGTGGGTTTGAGGAAGAGATTAATGCCTATTGCTTTTATGCTAGGGCATATTACAAGAAAGGAGATCAGGTTCTATTATGCTATGGAACTTACACAAATTTGGAGCTTCTTGAACATTATGGATTTCTGCTACAAGAAAATCCAAATGACAAAGTTTTTATCCCTTTGGAACCTGCTGTATATTCTTCCAGTTCATGGTCTAAGGAATCACTCTATATCCATCATAATGGGAAGCCTTCCTTTGCACTACTAGCTGCATTACGGTTATGGGCAACCCCTCAAAACAAGAGGAGGTCTGTTGGACATCTTGTGTATTCCGGTTCTCAACTGTCTGCAGACAATGAAATTTTTATCATGAAATGGCTGTTGAAAACTTGTGATGCTTTGTTAAAGAATCTTCCAACATCTCTTGAGGAAGACACCTTACTCCTCAATGCAATGGATAATAGTCACCATTTTTCTACTTTCATGGGGATCACAAATCTAATGTCTTCCAGGAATGAGATTTATAACTTCTTAGAAGGACATCATATAAAGGATGCACATAGTTTTACTGACGTAATTTTATCTAGAAAAGCAAGAAGGTCCATGGACATGTGGAAATTAGCTGTCCAATGGAGGCTCAAGTATAAGAAAGTCCTTTTTGATTGTATCTCTTATTGCACTGAGATATTGGATTCTTTCGTGACATAAAGCTTTGATTTACTGGTTGCTGTGTAGTTAAAATTTTTGCATTTTGCGTTCCT 1565 0.4058 MEREKENLESLLSWAAQLGISDSTTRTNQPQHSLSSCLGSSLCVSHFPHSGGRGLGAVRDIKKGEAVLRVPKSALITRESVMEDKMLCVAVSRHASLSSVQILVVCLLYEMGKGKTSRWHPYLMNLPHTYDILAMFGEFEKRALQVDEAIWGTEKATLKAKSEWKEAHALMEDLMFKPQFLKFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEEPSGIEDSEHLLSNTSNPDTILLSGDKNIMVDADLLDSHSQRLTDGGFEEEINAYCFYARAYYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKVFIPLEPAVYSSSSWSKESLYIHHNGKPSFALLAALRLWATPQNKRRSVGHLVYSGSQLSADNEIFIMKWLLKTCDALLKNLPTSLEEDTLLLNAMDNSHHFSTFMGITNLMSSRNEIYNFLEGHHIKDAHSFTDVILSRKARRSMDMWKLAVQWRLKYKKVLFDCISYCTEILDSFVT 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01544 497 FunFam Protein SET DOMAIN GROUP 40 8 310 - -
Pste8g01544 497 CDD SET_LSMT 51 310 - -
Pste8g01544 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 427 - -
Pste8g01544 497 Gene3D - 312 493 IPR036464 -
Pste8g01544 497 Pfam Rubisco LSMT substrate-binding 344 481 IPR015353 -
Pste8g01544 497 Gene3D set domain protein methyltransferase, domain 1 4 310 - -
Pste8g01544 497 ProSiteProfiles SET domain profile. 40 296 IPR001214 GO:0005515
Pste8g01544 497 Pfam SET domain 52 296 IPR001214 GO:0005515
Pste8g01544 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 306 419 IPR036464 -
Pste8g01544 497 FunFam Protein SET DOMAIN GROUP 40 314 424 - -
Pste8g01544 497 SUPERFAMILY SET domain 8 314 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01544 Pste-Chr8 8717552 8721476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01544 52 250 NAC Transcription Factor Family AT3G56570 25.238 4.62e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pste8g01544 SET 2.5e-08 No_clan