Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01542 ATGTACGTATATGCTCTCTATTTCCAAGCTGTTCAGATAGATAAGAGGAAGAAGGAGGTCCAAATTAAGTATCTATATATGCACACACATATGGCACCTGTTTTGCCTCCCGGTTTCAGGTTTCACCCTACTGACGAAGAACTTGTTGCATATTACCTTAAAAGAAAGATCAATGGTCGAAAGATTGAGTTGGAGATCATACCTGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTGCCAGGAAAATCATTGTTACCAGGAAAGGATTTGGAGTGGTATTTCTTCAGCCCTCGAGATAGGAAGTACCCAAATGGATCAAGAACAAACCGTGCAACCAAATGTGGGTATTGGAAAGCCACAGGGAAGGATAGAAAAGTAAATTCACAAGCTCGGGCAGTGGGCATGAAGAAAACCCTAGTTTATTATCGAGGAAGAGCACCCCATGGCTCTCGTACAAATTGGGTTATGCATGAATATCGTCTTGATGAGAGAGAATGCGAAACCGCTTCAGGCTTGCAGGATGCGTATGCTCTTTGTCGTGTGTGCAAGAAGACAACAGTGATTCCTCCAAAAATTGGGGGGCACTATGTTAATGTTCCCAATACCAACCAGATTACAAGTGATCAATCATCAAGCATTGAACTGTATTCTCATGAAGGAAGGGGTGAAGATTTAGATAGCTCAAATTATTTTATGTCGGTGGATCATACTTGCTCGCCCCACAACATGGGAAATGAGACTTCTGTCACGATCAATGAATGGACAACAAGGGAACATGAGGAATGGTCACACTTCTCATCACATGACCCATTATTTAGTCTTCCAACTTCTTCTTTTCCCAATTTTGGAGCCATAGCATATCCTCCATCCAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAGCATAGGTTTACTATGCCTCCTTTGGAGGTGGATGACTTCCCTCAAGTTGGAACCTCAGAGCTGAAAATGACACAAGCCTCCGGTTCCATACAAGGAAGCAGAACTGAAACAGATATCTTGCAGGAAATTCTTTCAGTTGCTCAAGCTTCTCAGGAATTGATAAATCAATCCAGCTACTCACAGGAATGGGGTGGCAATGATAATTATGCTCCTTTTGAAGATGATTTTACCTTTAGGGTTGGCACTAATTTCAATCATTTAAATGAAATGAACTTAACGAGACATGCAGACAAAACATGCGAAGATACAAAAACAAAGACAATAGAGATCGGAGATGTGGATGAAGAATTTAAGGCTGAGAGGATGGTAGAGAATTTAAGATGGGTTGGGATGTCAAGAGAAGATTTAGAAAAGATGGAAGATCAAAAGATTGTTCCCATAGAGGATATTTCAAGCTTCCAAACTAACAGGGAAGAAAATGCGGTGCAAGAATCTAAACATAGCAAAAAGGAACACAATGACACTGAAAACGATTTCCTGGGCTTCATCAATGAAGATGACTTTAACGACAACTTCATAGAAGATGGTAACATGGATGATTATTCAAGTTCTCCCAGTTTTGAAGTGATTGAGGAAATAAAGGTCAATCATGGAATGCTTGTTTCGAGTCGACAAGTAGCTGAAACATTCTTTCACCAAATAGTTCCTTCACAAACCGTCCAAGTTCACCTCAATTCAGTGATGGCACACAATCATTACGTAGACATTGACGAGGCAATGTTAATGATAATGGAGAATCAAGGGTCTTTATTAAGGAAGTTTATGGCCTATCTGATGGGGAAGCTCATAAAATCTTCAAAGACGATAGCAAGTGCAATTGTATTTGTCTTTGCAATTGTGTCAATGCATTGTGTTTATTTGAAGGAAGAAGAGGGAATTTGGAATGAGGCATGTTGCGGAAGTACTGCTACCAACATGAAGAGAATGAGTCCATCATCTGAGATAATAAAATGGAATGAGTCAAATGAAGTTTGCTTTGTTGGTGTCAAAAGAGAGAAAGGATTAAATATGGTCTTGAAGAAAATAGGCATTTTCCTCACAATATCCTTGGCTCTTTGTACCATGTGGACTAACCAGAATATGATAGTTAGCCCTTAA 2067 0.4001 MYVYALYFQAVQIDKRKKEVQIKYLYMHTHMAPVLPPGFRFHPTDEELVAYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKCGYWKATGKDRKVNSQARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDERECETASGLQDAYALCRVCKKTTVIPPKIGGHYVNVPNTNQITSDQSSSIELYSHEGRGEDLDSSNYFMSVDHTCSPHNMGNETSVTINEWTTREHEEWSHFSSHDPLFSLPTSSFPNFGAIAYPPSKVDIALECARMQHRFTMPPLEVDDFPQVGTSELKMTQASGSIQGSRTETDILQEILSVAQASQELINQSSYSQEWGGNDNYAPFEDDFTFRVGTNFNHLNEMNLTRHADKTCEDTKTKTIEIGDVDEEFKAERMVENLRWVGMSREDLEKMEDQKIVPIEDISSFQTNREENAVQESKHSKKEHNDTENDFLGFINEDDFNDNFIEDGNMDDYSSSPSFEVIEEIKVNHGMLVSSRQVAETFFHQIVPSQTVQVHLNSVMAHNHYVDIDEAMLMIMENQGSLLRKFMAYLMGKLIKSSKTIASAIVFVFAIVSMHCVYLKEEEGIWNEACCGSTATNMKRMSPSSEIIKWNESNEVCFVGVKREKGLNMVLKKIGIFLTISLALCTMWTNQNMIVSP 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01542 688 Gene3D NAC domain 44 188 IPR036093 GO:0003677|GO:0006355
Pste8g01542 688 Pfam No apical meristem (NAM) protein 36 162 IPR003441 GO:0003677|GO:0006355
Pste8g01542 688 ProSiteProfiles NAC domain profile. 35 185 IPR003441 GO:0003677|GO:0006355
Pste8g01542 688 MobiDBLite consensus disorder prediction 457 477 - -
Pste8g01542 688 MobiDBLite consensus disorder prediction 463 477 - -
Pste8g01542 688 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 33 278 - -
Pste8g01542 688 FunFam Nac domain-containing protein 86 44 188 - -
Pste8g01542 688 SUPERFAMILY NAC domain 25 185 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01542 Pste-Chr8 8699328 8703257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01542 31 678 NAC Transcription Factor Family AT1G65910 41.766 6.01e-160 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste8g01542 NAM 1.3e-40 No_clan