Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01538 GCAACGGTAAGTAAAGAAAAGGAAAGTAGAGTGAGTGTGGAGTGTGGAGTGTGGAAGGTTGCAAATAATCCATAGCTTTGGTCGGTTTCACAATCTCCATCGCCAAACGGAAATGTTGGCACTCGCAGCAGCGTTCTCACTATGCATCATCCTCTCCTCACCAGTCTCCTCTCACTACTCCTCCCATCCCTCCGACCAATTCCCGCCGTCCTTCAGCGAGTGGCGATCCGCCCACGCCACCTACTACGCCGCCGCGGATCCCCGGGACGCGGTGGGCGGCGCGTGCGGATACGGCGACCTCGTGAGGGGCGGCTACGGCATGGGCACGGCCGGCCTCAGCGAGAGCCTCTTCGAGCGCGGCCAGATCTGCGGCGCGTGCTTCCAGCTCCGGTGCGTGGACGACAACCAATGGTGCATCCCCGGCACCTCCATCATTGTCACCGCCACCAACTTCTGCGCCCCCAACTACGGCTTCTCCTCCGACGCTGGCGGACACTGTAACCCTCCCAACAATCACTTCGTTCTTCCTATCGAATCCTTCGAGAAGATTGCCATTTGGAAAGCCGGCAACATGCCCGTCCAGTATCGCAGAATAATGTGTAGGAAGGAAGGAGGTATGCGATTTACTGTTACCGGTTCTGGAATCTTCATTTCGGTGCTGATCAGCAACGTTGCTGGTCACGGAGACATAGTGGCGGTGAAGGTTAAAGGCTCCAGAACTGGTTGGCTTCAGATGGGTCGGAATTGGGGGCAAAATTGGCATGTAAATGCGTTGCTGCAGAATCAACCTCTTTCGTTTGAGGTTACTACTAGTGATAAGAGAACGGTTACGTCTTACAATGTTGCTCCCAAGGATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGACTTGAAAGATCAAATTGAAGATATCTTGTTTTTAAGGGACCATTCTCCTTCCCAAAAGATTTTTACTACTACCGCTATAGTTTTCTTTCTACATTTTCATTCTTTTGGTTTTGTAGAAGACTCTGTAGATAGCAAATGATTTGGTGGTCTGTAAGGTTTTCAATGTGACGGTGTACCTTTCTATTTATTATCTTAGGAAGTTTTGTATTAAAATATATATGTTCCTTGTTGGTCAACAACAAAGAAGACTTGCAATGTAAATTTTGTAAGGCTCTCTCATAAGACGTATCAATATCCTACTAACTTTACTCACAAGTTGTCTAAAGTTTTACTAGTCACTCAACCCATCGCATAACAGTTATCAGAATGCT 1267 0.4838 MLALAAAFSLCIILSSPVSSHYSSHPSDQFPPSFSEWRSAHATYYAAADPRDAVGGACGYGDLVRGGYGMGTAGLSESLFERGQICGACFQLRCVDDNQWCIPGTSIIVTATNFCAPNYGFSSDAGGHCNPPNNHFVLPIESFEKIAIWKAGNMPVQYRRIMCRKEGGMRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLQMGRNWGQNWHVNALLQNQPLSFEVTTSDKRTVTSYNVAPKDWTFGQTFEGKQFET 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01538 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Pste8g01538 262 SUPERFAMILY Barwin-like endoglucanases 36 186 IPR036908 -
Pste8g01538 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Pste8g01538 262 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Pste8g01538 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Pste8g01538 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Pste8g01538 262 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Pste8g01538 262 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Pste8g01538 262 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Pste8g01538 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
Pste8g01538 262 PANTHER EXPANSIN-A15 16 260 IPR002963 GO:0009664
Pste8g01538 262 SMART dpbb_1 72 158 IPR007112 -
Pste8g01538 262 CDD DPBB_EXPA_N 36 163 - -
Pste8g01538 262 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Pste8g01538 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Pste8g01538 262 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Pste8g01538 262 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Pste8g01538 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Pste8g01538 262 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Pste8g01538 262 PRINTS Expansin signature 94 105 IPR002963 GO:0009664
Pste8g01538 262 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Pste8g01538 262 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Pste8g01538 262 FunFam Expansin 168 260 - -
Pste8g01538 262 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Pste8g01538 262 Gene3D - 169 260 IPR036749 -
Pste8g01538 262 Gene3D - 25 164 IPR036908 -
Pste8g01538 262 Pfam Lytic transglycolase 73 158 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01538 Pste-Chr8 8670037 8671708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01538 36 262 Expansin Gene Family AT3G03220 83.260 1.70e-146 409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01538 8 8670037 8671708 Pste8g01538 8 8670037 8671708 ECH
Pste7g01931 7 17632771 17642044 Pste8g01538 8 8670037 8671708 PCT