Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01517 ATGTCTTTCTCTCTCATCGAAGCTTGCAAGAAGCGAAAACGGTGGCCAAAGTTTTTTAGGTTTAACTCATTCGGCGACCCTGGTGTTCCTATTGAACCTTCGGGTCCCTTCCGCGATAACGTTCGGGTTTTCCTCCAAGAAGGTGGGGAACTCGAAGATTATAGTGTCTCCGGGAACCCCCTTTGGTGCACCCTTCTCATGCACGACAAGTCAAACATGATGGTTCCCTTTTACTCCATCGAAGACCACGTGTACCACTCTGCGCACCCCTTCTGCGATCACTGCCGCTGCCGGAGCTTAGCTGATGATTCTCGAACAGGGTCGTTTACTGGCTGGAGTGGTCATTTTGTATCAAAGAGAAGGTATCATTTTATAATCCCGATGGACAACGAGTGGCATAAACCCTTAGAAGAAGGTTCGGTTGACAATCAGAGGCATCTGTTGCATGGGGTGATTCATTGCAATGGGTATGGCCATTTGCTCAGTGTCAATGGCATTGAAGGAGGCTCCAAGATTCTTAGTGGCAGAGAGATCATGGATCTCTGGGATAGGGTATGCACCAATCTCCGAGTGAGGAAAATTGCAGTTGAAGATGTTTCATGTAAGAGGTCTATGGATCTTCGCTTACTTCATGGAGTTGCCTATGGACACTCCTGGTTTGGTAGGTGGGGTTATAGATTTTGCCGTGGAAGCTTTGGAGTGTCAGAGCAAGACTATAATCAAGCAATGACAGCGCTTGGTTCCTTGGAGCTTGACATGATTGTAAAAGATTTGAGTAAGGTAAAATACAACAAAGAAATCAAACAAATGATTCGGTGCTATAGAGATATGAGTGAAACTCATATTATCTCTCTCAGGGATCTTCTAAGGTTTATGCTAACTGTCAAGTCTTCCCGTGCTCCTGTGCCTAAGCTAACAGTCACTTATTCAGCTACTCCTGCTGATTCCTCTTCAGCAATCATCTCACGAAATTCAACCAAACCCGCACTTCCAAACAGATCAAATTCCATGAAGGAGAAATCTGTGAGGTACAAGAAGTTTAGCAATGCAGTGACTAACATGGATAGCAGGTGGCCTACAAGGAGACTAGAGTTTGCAGCTCAAGTGATTGTGGATGCACTGAAAGAGAACAAGGCTGTAAAACCAGGCTCGGGTGGGATGGCAAGGCAAGATGTGAGAGATGCAGCTAGACTCCACATTGGTGACACAGGCTTACTTGACTATGTACTTAAATCACTCAACAATGTAATTGTTGGAAACTATGTTGTTCGTCGCATGGTGAATCCATCAACTAGAATCCTTGAATATACCATTCATGATCTTGGCAAGGGGTTGACGGCCCCTGAAGTGGAGCCTGAGGTGATGACTCATGTAGATCAACAAGTAGTAGAGTCATCTTGGGTGCCTGGTAATGATGTATATTGTGATGTCTTGTTTCTATACAAGAATGTGCTATTGGGTTACTCTGATTCAGAAACAGTGGAGTTGGCAGTTCAGACTATTCTAGACTGCAGATACTTTGTGAAAGAGTGGCCGATAAGGGATGAAATGGAGGAGCTGGTATTGACATTCATTTGCCGCTTGCAACCAAATTTTGTGGACAAAAAGTATGAGTTGAAAGGTGTAGCATGTGGAGAGGTTGTAGTGGTTCCACTGCATGCAACTGTTGGGGACTTGAAGAGGGCAGCTGAGGCTGCTCTGAGGGATACTTACTGTATTGCAGAAAGACTTATAGTGACGGACATTAAAGAACTTATGGCCGTGAATGATGGGGAAGTGCTTTTTGGACTAATCCAATCTGGTGTGGAACTTTGTGTGAGGGGAATCGCTATTGATTTGTGCACCCCATTGAAGTATCAGGGTGGATCTGACAACTGGAAGGTCAGATGTGAGTGTGGAGCTCAAGATGATGATGGGGAAAGAATGGTGGCTTGTGACATTTGTGAGGTGTGGCAACATACTCGCTGCTGTGGCATAGATGACTCTGAGACAGTGCCTCCATTGTTTGTGTGCACTGGTTGCTGTGATTCTCTTGCACCCTCCAGGACTGAATCGGCCTTTGGTGTGGATTCTGCTGATTTTCTGATTTCAACGGACCCTACCCTTTTGCTAGAATATGACTATGCATACTAA 2133 0.4519 MSFSLIEACKKRKRWPKFFRFNSFGDPGVPIEPSGPFRDNVRVFLQEGGELEDYSVSGNPLWCTLLMHDKSNMMVPFYSIEDHVYHSAHPFCDHCRCRSLADDSRTGSFTGWSGHFVSKRRYHFIIPMDNEWHKPLEEGSVDNQRHLLHGVIHCNGYGHLLSVNGIEGGSKILSGREIMDLWDRVCTNLRVRKIAVEDVSCKRSMDLRLLHGVAYGHSWFGRWGYRFCRGSFGVSEQDYNQAMTALGSLELDMIVKDLSKVKYNKEIKQMIRCYRDMSETHIISLRDLLRFMLTVKSSRAPVPKLTVTYSATPADSSSAIISRNSTKPALPNRSNSMKEKSVRYKKFSNAVTNMDSRWPTRRLEFAAQVIVDALKENKAVKPGSGGMARQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRMVNPSTRILEYTIHDLGKGLTAPEVEPEVMTHVDQQVVESSWVPGNDVYCDVLFLYKNVLLGYSDSETVELAVQTILDCRYFVKEWPIRDEMEELVLTFICRLQPNFVDKKYELKGVACGEVVVVPLHATVGDLKRAAEAALRDTYCIAERLIVTDIKELMAVNDGEVLFGLIQSGVELCVRGIAIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCTGCCDSLAPSRTESAFGVDSADFLISTDPTLLLEYDYAY 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01517 710 SUPERFAMILY FYVE/PHD zinc finger 622 680 IPR011011 -
Pste8g01517 710 ProSitePatterns Zinc finger PHD-type signature. 630 674 IPR019786 -
Pste8g01517 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 680 IPR013083 -
Pste8g01517 710 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 9 684 - -
Pste8g01517 710 SMART PHD_3 629 675 IPR001965 -
Pste8g01517 710 CDD PHD_MMD1_like 630 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01517 Pste-Chr8 8374078 8377124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01517 10 680 PHD Transcription Factor Family AT5G22260 33.797 2.01e-119 371