Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01512 ATGGTAGAAGGAAGTGAGGCGGTTCTGGCATGGATGCGCCACCCCGTTGACATCACTCACTGTGAAGAACTCTCCATCTGTAGGGTTCCTTTCCTTGACCGCAGGTTAAAGTCAGTACTGCGGGAGAAGATGGGAATCTCGAAGCTCTTTCCGGTTCAAGTCGGTATTTGGCTAGAAACTGTTGGACCAGGTGATTTTGAACGAGATCTTTGTGTAAACTCGCCCACCGGAAGTGGCAAAACGTTGGCCTATGCTCTTCCTATCGTGCAAAACTTGGCGTCCACTCACACCGTTCACTGCCTTCGTGCTTTGATTGTACTTCCCACACGTGACCTTGCTTTGCAGGTTAAGCACGTCTTCCACCTCCTTGCATCACCGCTGGGTTTGCACGTTGGCTTGGCTGTTGGTGGTCAATATTCGGTTGATGATGAGATTTCTAGCTTCCTTTATCGACCAGGGGGGAACAACGGTCTAGACCCACCATTGTTTGGCTTTCAAACCAAGGTGGACATATTGGTAGCCACCCCTGGAAGGCTCGTCGACCATGTCAACAATGGCTTAACTTTGAAACATCTTCATTATCTTGTGGTTGATGAAGCAGATCGATTGCTCCGGGAGGACTATCAGTCTTGGTTACGTACTGTGCTTAAATTGACCCAGTCTAATGATAAGGATGATGGTGGTAATGCTTTTCAATTGGGGTTCCCTTTTTCTCCCTGGAATGTAATAGGATGTAGTGGAGTTGAGAGGGGGTCCAAGCCTCACTCTAGGCTGGCAAAGATAATTTTATCTGCAACATTAACTCGGGACCCAGGAAGGCTTGCTCAGCTTAATTTGCATCACCCTTTATTTCTGAGCGCTGGGAAAATGCGTTATCAGCTCCCAGAAAATTTGGAATCTTACAAACTGATCTGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTAGGAGAAGAAAAATGCATAGTTTTTACAAGATCTGTGGATTCAACACATCGTCTCTGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATTGATATTAAGGAGTATTCTGGTCTAAAAAATCAACGGGTAAGAAGCAAGACACTGGATAAATTTCGGAAGGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTAATTAATTATGACATGCCCAAATATACAAAGACTTATGTTCATCGAGCTGGTAGGACGGCAAGAGCTGGCCAGACTGGACGTTGCTTCACATTAATGTCAAATGATGAGGTTGGAAGATTTAATAAGTTGATGAAAAAGGCTAAGGGTAGTGCTTGTGTCGTGCATAGTGTTCCGTCCAGTTTGATTGAAGCACTTCATAGTACCTACCAATCAGGTGAATATTGTGTAGATCTTCTAAAATTGTTTGATGCCTGCATAAGGAATGAATATAAAATAATACAGTTGTCCTTTGAGAATGTATCTGGGACAACGAGCTTCATGCTTGATTTTCTTCTCCTTTTTGCTGTTTTACATGGAGTGTTTCATAGACTCTGTCATGCACTGTCAAAATTGAAGGAGATAATTTTGGAGACCCGGAGTAAACCCAAGGATAAGTGTTCTCAATATTCAGCAGAATAG 1653 0.4344 MVEGSEAVLAWMRHPVDITHCEELSICRVPFLDRRLKSVLREKMGISKLFPVQVGIWLETVGPGDFERDLCVNSPTGSGKTLAYALPIVQNLASTHTVHCLRALIVLPTRDLALQVKHVFHLLASPLGLHVGLAVGGQYSVDDEISSFLYRPGGNNGLDPPLFGFQTKVDILVATPGRLVDHVNNGLTLKHLHYLVVDEADRLLREDYQSWLRTVLKLTQSNDKDDGGNAFQLGFPFSPWNVIGCSGVERGSKPHSRLAKIILSATLTRDPGRLAQLNLHHPLFLSAGKMRYQLPENLESYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVDSTHRLCKLLNCFGDLQIDIKEYSGLKNQRVRSKTLDKFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYTKTYVHRAGRTARAGQTGRCFTLMSNDEVGRFNKLMKKAKGSACVVHSVPSSLIEALHSTYQSGEYCVDLLKLFDACIRNEYKIIQLSFENVSGTTSFMLDFLLLFAVLHGVFHRLCHALSKLKEIILETRSKPKDKCSQYSAE 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01512 550 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 61 285 IPR014001 -
Pste8g01512 550 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 196 204 IPR000629 -
Pste8g01512 550 CDD DEADc_DDX51 36 286 - -
Pste8g01512 550 Gene3D - 12 288 IPR027417 -
Pste8g01512 550 Pfam Helicase conserved C-terminal domain 310 421 IPR001650 -
Pste8g01512 550 SMART ultradead3 45 301 IPR014001 -
Pste8g01512 550 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 463 IPR001650 -
Pste8g01512 550 Gene3D - 297 462 IPR027417 -
Pste8g01512 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 440 IPR027417 -
Pste8g01512 550 Pfam DEAD/DEAH box helicase 67 271 IPR011545 GO:0003676|GO:0005524
Pste8g01512 550 SMART helicmild6 337 421 IPR001650 -
Pste8g01512 550 CDD SF2_C_DEAD 298 429 - -
Pste8g01512 550 PANTHER RNA HELICASE 33 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01512 Pste-Chr8 8282804 8286614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01512 69 463 Eukaryotic Initiation Factors Gene Family AT1G72730 22.922 4.68e-24 102