LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g01486	AATAGACACAATTTTGTTCAAAGATAAATAGTGATAGTGGGATTGTAGGACTTTAGGGGCTGATTTCTATATATAAATAAGTAGGTGGTGGTGCTCTATCCCAACTTATGTGCCCATTCCTATTAGCTCTCTTAAACTCTCTTTCAATTTGAACCCTCAATTGTCAGGGGATCATTTATAACTTGGTTTTGTAGCATTACCCTTTTGGTATATAAAATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGTCCATGGACTGCAGAGGAGGATAAGAAGCTCATCAGCTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGACTATTAAGGTGTGGAAAGAGTTGCAGACTTAGGTGGACAAATTATCTGAGGCCAGACTTAAAGAGAGGCCTTCTATCAGAATATGAAGAAAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCCAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATAAAAAACCATTGGAACACCCACATAAAAAAAAAGCTCAAGAAAATGGGTATTGATCCTGTGACACACAAACCACTCCCTAATGCTACTGAACAAACCCAAAATCAACACAAACAAGAACAACACCAAGTACACCAACCCGTAGAAGAAGAACAGCAGAACCAACAACTTTTGCAAGTAGACTTTGACCCGAAAGTTGAATCTGAAGTTGACCCCCATAAGGAGACAGAGAAGCTAGAAACTTCACTTGAGTCATCTACCATCACTGAAGAGGATAAAGAGGAAGACCAAATCATAACACCATTATTTGACACAATGGAGCTAATGAATGCTTTCTGCACAGATGAAGTTCCAATAATTGAACCTGATGAGATTCTAATGCCTTGTGCTCCTTCCTCTTCATCCACCTCTTCATCTTCTTCAAATTCAACCAATTTCCTTGAAGACCTTCAGCTACCAGATTTTGAATGGTCTTGTAATTACAATGACAATAGTACTATTATTAACAATAACAACAATGAAGACGACAACAACGATAGCAATATGGCCTTGTGGGATGATGAGTTTGTTAGCAAACTTAATTGGCTGATTAATGATGACGACGATAGTAATGGAAACCAAGTTTTTGATGCTCCTCTCACTCAGTTCTCAAGAATGGTCATGGATTCAGAATCTTGGGCATATGGCTTCTTTTGATTTTAATTTTTCTCGCTTATCCTTCTTCCTTGTTGCAATTTGTTTCTACATATGTTTTTAAGAAGAATAACGGTAAATCATTTATTAAGATTTAGGAAGAACACAACTCTTGTTAGCATTACCAACTTTCCCCTTAACCTTTTCACCTTGTCATGTACAAAAATATGTGTATGTAATATGATAATGAAAATAAGTCCC	1419	0.3784	MGRQPCCDKVGLKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLPNATEQTQNQHKQEQHQVHQPVEEEQQNQQLLQVDFDPKVESEVDPHKETEKLETSLESSTITEEDKEEDQIITPLFDTMELMNAFCTDEVPIIEPDEILMPCAPSSSSTSSSSSNSTNFLEDLQLPDFEWSCNYNDNSTIINNNNNEDDNNDSNMALWDDEFVSKLNWLINDDDDSNGNQVFDAPLTQFSRMVMDSESWAYGFF	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g01486	334	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Pste8g01486	334	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Pste8g01486	334	FunFam	MYB transcription factor	11	67	-	-
	Pste8g01486	334	CDD	SANT	16	61	IPR001005	-
	Pste8g01486	334	PANTHER	F14D16.11-RELATED	1	288	-	-
	Pste8g01486	334	MobiDBLite	consensus disorder prediction	170	199	-	-
	Pste8g01486	334	MobiDBLite	consensus disorder prediction	123	155	-	-
	Pste8g01486	334	Gene3D	-	70	159	-	-
	Pste8g01486	334	Gene3D	-	11	67	-	-
	Pste8g01486	334	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Pste8g01486	334	Pfam	Myb-like DNA-binding domain	71	111	IPR001005	-
	Pste8g01486	334	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Pste8g01486	334	SMART	sant	66	114	IPR001005	-
	Pste8g01486	334	SMART	sant	13	63	IPR001005	-
	Pste8g01486	334	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Pste8g01486	334	FunFam	MYB-related transcription factor	70	130	-	-
	Pste8g01486	334	CDD	SANT	74	112	IPR001005	-
	Pste8g01486	334	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Pste8g01486	334	MobiDBLite	consensus disorder prediction	129	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g01486	Pste-Chr8	8146608	8149165	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g01486	1	306	MYB Transcription Factor Family	AT1G66230	56.452	2.57e-100	295

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste8g01486		Myb_DNA-binding	1.3e-12	CL0123