Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01471 GCCGAAATCATTTTCAGGAATCTGAATTGAACATTACTGTTAGCTTACTCTCCAAGCTTTGTAGACGAGAGGAGATGCCTCTAGAAATTAAATGGCCATTTCCCATGCCTCTTTATTCCCCATTTTAAATATGAACTTCGAATCAAACACCGATTCTTCTTTATCCTCAAATTCTATATTCTCGGCTCTGTCATGCGTGATTCTAATTCTACTGATTTTTTCTCCTTTTTCTCTCTACTAATATTAATCTATCCAATGCTCATCTCTTCTAAGAGCAATCTGATAACTGCGTTGGTCGTCAATTCCTTCTGTCCAGTATTCATAATTTGAGTTAATATGGGCTACTGGAGCAGTGAACGTGATCAAGCCAATCAACAAAGTGATCTTGGTGCAGTTCTGCGTGATGGAAAAGAAATACTTCTTCAGGGATTCAACTGGGAGTCTCACAAGTACAACTGGTGGAATAATTTAGAGGGCAAAGTTCCTGACATAGCTAAAGCTGGATTTACTTCAGTCTGGTTGCCCCCACCAACTCATTCCTTTTCACCGGAAGGTTACACTCCTCAGAACCTTTACTCTCTTAATAGTAAATATGGTTCTGAGCGTCAGCTAAAAGCTTTACTTCAAAAGATGAAGCAATACAAAGTCAGAGCAATGGCTGACATAGTTATCAATCATCGCACTGGCACCACCCAAGGACGTGGAGGGATGTATAATCGTTTTGATGGAATTCCATTAGCGTGGGATGAACGTGCTGTGACATCATGTACTGGAGGATTGGTAGCATTTATTACATTTCATATACTTTTGTTGATTTTAATCTGCACCGTACTTACTATAAAAGTCCTTCATTTACGTGCAAAACTTCCTAATACAAGTGATGGTAATAAAAGTACTGGGGCCATTTTCCATGGGTTCCCCAATATAGACCATACTCAAGATTTTGTGAGAAAAGATATCATTGGATGGCTCCGTTGGCTGCGCTATGAAGTGGGCTTTCAGGATTTCCGTTTTGATTTTGTGAAGGGGTTTTCACCAAAATACGTGAAAGAATACGTTGAAGGAGCAAAACCCATGTTCTCTGTTGGTGAATATTGGGATTCTTGCAATTATAAGGGTTCTATGTTGGACTACAACCAAGATGGCCACAGGCAGCGAATAATCAATTGGATTGATGGTACTGGACAGCTTTCAACTGCGTTTGACTTTACAACAAAAGGAATTCTCCAGGAAGCTGTCAAAGGAGATTTTTGGCGTCTGCGTGATCCCCAAGGGAAGCTCCCAGGTGTGATCGGATGGTGGCCTTCCAGATCTGTCACCTTTATAGATAATCATGATACTGGTTCAACTCAGGCTCATTGGCCCTTCCCAAAAGATCATATTATGGAGGGGTATGCATACATATTGACTCATCCTGGAATACCGACAATTTTCTATGACCACTTCTTTGACTGGGGTGATTCAATTCGGGAGCAGATTGTGAAGTTGATTGACGTTCGCAAGCGTCAAGGTATTCAAAGTAGATCACCTGTGAGGATTTTGGAGGCCAAGCACAACCTTTACTCTGCAATAATAGGAGAGAAAGTGTGCATGAAGATTGGAAATGGTTCATGGTGTCCAACGGGGAGGGAATGGACACTATCCACTAGTGGCCACAATTATGCTGTGTGGCACAAGTAGTGTTCAGTTGACATAACCCTTATTCACTGGGTATACGCCGAAAAGAGAAGGGAATTAACATGCTTCTTATAAAGTTGGAGCTCCTCCCTTCGTTTAGTTGGCTTTGGAAGCTCGTTCCTTCACCTTGCGTGGTACCCACTTAAATAGTAATAATAGCTGCATTGTTTATGTAATACATAATAAAAATAAGCAGCTTTGTTTATGTTATATATAAAATAAATGAATAATAATAACTTTCTATTAGTACCTA 1930 0.4031 MGYWSSERDQANQQSDLGAVLRDGKEILLQGFNWESHKYNWWNNLEGKVPDIAKAGFTSVWLPPPTHSFSPEGYTPQNLYSLNSKYGSERQLKALLQKMKQYKVRAMADIVINHRTGTTQGRGGMYNRFDGIPLAWDERAVTSCTGGLVAFITFHILLLILICTVLTIKVLHLRAKLPNTSDGNKSTGAIFHGFPNIDHTQDFVRKDIIGWLRWLRYEVGFQDFRFDFVKGFSPKYVKEYVEGAKPMFSVGEYWDSCNYKGSMLDYNQDGHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGDFWRLRDPQGKLPGVIGWWPSRSVTFIDNHDTGSTQAHWPFPKDHIMEGYAYILTHPGIPTIFYDHFFDWGDSIREQIVKLIDVRKRQGIQSRSPVRILEAKHNLYSAIIGEKVCMKIGNGSWCPTGREWTLSTSGHNYAVWHK 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01471 447 Pfam Alpha amylase, catalytic domain 48 116 IPR006047 GO:0005975
Pste8g01471 447 SMART alpha-amyl_c2 389 447 IPR012850 GO:0004556|GO:0005509|GO:0005975
Pste8g01471 447 CDD AmyAc_arch_bac_plant_AmyA 27 399 - -
Pste8g01471 447 SMART aamy 26 400 IPR006047 GO:0005975
Pste8g01471 447 SUPERFAMILY Glycosyl hydrolase domain 393 447 - -
Pste8g01471 447 Gene3D - 393 447 IPR013780 -
Pste8g01471 447 PANTHER ALPHA-AMYLASE 28 446 - -
Pste8g01471 447 PIRSF Alpha-amylase_plant 174 447 IPR013775 GO:0004556|GO:0005509|GO:0005975
Pste8g01471 447 PIRSF Alpha-amylase_plant 5 148 IPR013775 GO:0004556|GO:0005509|GO:0005975
Pste8g01471 447 Gene3D Glycosidases 25 147 - -
Pste8g01471 447 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pste8g01471 447 PRINTS Alpha-amylase signature 221 232 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pste8g01471 447 PRINTS Alpha-amylase signature 324 336 IPR006046 GO:0004556|GO:0005975|GO:0043169
Pste8g01471 447 Pfam Alpha-amylase C-terminal beta-sheet domain 390 446 IPR012850 GO:0004556|GO:0005509|GO:0005975
Pste8g01471 447 Gene3D Glycosidases 169 392 - -
Pste8g01471 447 SUPERFAMILY (Trans)glycosidases 33 377 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01471 Pste-Chr8 8026979 8032602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01471 1 447 Glycoside Hydrolase AT1G76130 69.575 0.0 669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01471 8 8026979 8032602 Pste8g01471 8 8026979 8032602 ECH