Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01436 GAAAATGTTAGTTTAAGTTCGGCAATTGAAATGAAAGTTGAATAAAGAAAGAAACTGTCTCAACCAACAATTACCCTTTCTCTCTCTTTATACATAAACACTGCCTTCATAACTGTTCCTTCTTAAACCAATCTCTCTTTTTTTGTTTTGTTAGTGTCAATAAATATACTGATGGAAGCTTCTCCACCGGAGACGGAGCCCACCGCGGTGGCCGTACGGCGGGCGTTGGAGCTGCTGCAGCTGAACGACCCGGTTTTGAGGGTCCAAGCGGCGAAGGACATCCGCCGCCTCACCAAGACCTCCCACCGCTGCCGCCGCCAGCTCCGCCAAGCGGTGGCGCCACTCGTCTCCATGCTCCGAGTCGACTCGCCCGAGTTCCACGAACCCGCGCTTCTCGCTCTGCTTAACCTCGCCGTACAAGACGAAAAGAATAAAATTAACATCGTGGAAGCTGGCGCATTAGAACCGATAGTTAGTTTCCTCATGTCACAAAACCCAAATCTACAGGAGTATGCAACTGCATCTTTGCTCACTCTATCTGCGTCTCCAACCAACAAAGCAATCATTAGTGCTTGTGGCACCATTCCTCTTCTTGTGAATATTCTTAGGGATGGTAACCCTCAAGCTAAAGTTGATGCTGTAATGGCACTGTCTAATTTATCAACACACCCTGATAACCTCAGCATCATTCTTGAAACAAATGCAATGCCTTTTATAGTTGATCTTCTCAAAACTTGTAGAAAATCCTCAAAAATAGCTGAAAAATGTTCTGCTTTGATAGAAGCCATGATGGGTTATGAGGAGGGCAGAACTGCCTTAACATCTGAAGATGGTGGGGTTCTTGCTGTTGTAGAAGTTCTTGAAAATGGTACTCCCCAAAGTAGGGAACATGCTGTTGGGGCACTACTGACAATGTGCCAAAGTGATAGATGTAAATATAGGGAACCAATTCTTAGAGAAGGTGTTATTCCTGGACTTCTTGAGCTTACAGTTCAAGGAACCCCAAAGTCTCAGCCAAAAGCACGTACGCTTTTGCAGTTACTAAGAGAATCTCCATATTCAAGACCTGAAGTTGAACCTGACACTCTTGAGAACATAGTGTGTGACATCATATCACAGATTGATGGGGATGATCAGTCTGATAAAGCAAAGAAGATGCTGGCTGAGATGGTCCAAGTCAGCATGGAGCAGAGTTTGAGACATTTACAGCAAAGGGCTCTTGTATGTACCCCTACTGATATGCCTCTTGCAAGTTGTGCTTCTGAAGTTTCTTCAAAATATTAGCAGGGCCTGTTCTACTTTGTATCATTCCACCCTTTTTCTCTTCACTCATTTTATTTCCAGTTGGAACAAGCGAGATAAATTCTCTGTAATATATATATATATATATAAAGAGAAAGAAAACTGAGCAGGAAAGTATCGGTAAAGAATGCCAGTCCAGGCCATTTTATTTATGGAGGTATCGTGTGACTGGTAATTGTCAATTAAAATAAAGTTGTATGATTGTAAGAGGTTGGTTTTCTAGTTGATTTGTAATGTTGTATAAAATAATTAACTGAAGTAGTTAAGGATCTTATCAAATCTTCTTCATCGTCTTTGCAATTGCGTTGTAAGTACATGATACATCTTGAATTCTTGATGGGACTTTTCATCTTATTAAGTTTGGT 1667 0.4181 MEASPPETEPTAVAVRRALELLQLNDPVLRVQAAKDIRRLTKTSHRCRRQLRQAVAPLVSMLRVDSPEFHEPALLALLNLAVQDEKNKINIVEAGALEPIVSFLMSQNPNLQEYATASLLTLSASPTNKAIISACGTIPLLVNILRDGNPQAKVDAVMALSNLSTHPDNLSIILETNAMPFIVDLLKTCRKSSKIAEKCSALIEAMMGYEEGRTALTSEDGGVLAVVEVLENGTPQSREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQPKARTLLQLLRESPYSRPEVEPDTLENIVCDIISQIDGDDQSDKAKKMLAEMVQVSMEQSLRHLQQRALVCTPTDMPLASCASEVSSKY 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01436 370 Gene3D - 6 353 IPR011989 -
Pste8g01436 370 Pfam Armadillo-like 97 169 IPR006911 -
Pste8g01436 370 SMART arm_5 125 165 IPR000225 GO:0005515
Pste8g01436 370 SMART arm_5 209 250 IPR000225 GO:0005515
Pste8g01436 370 SMART arm_5 166 208 IPR000225 GO:0005515
Pste8g01436 370 SMART arm_5 84 124 IPR000225 GO:0005515
Pste8g01436 370 SMART arm_5 43 82 IPR000225 GO:0005515
Pste8g01436 370 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 53 95 IPR000225 GO:0005515
Pste8g01436 370 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 95 136 IPR000225 GO:0005515
Pste8g01436 370 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 136 178 IPR000225 GO:0005515
Pste8g01436 370 SUPERFAMILY ARM repeat 15 306 IPR016024 -
Pste8g01436 370 PANTHER U BOX DOMAIN-CONTAINING 13 295 - -
Pste8g01436 370 FunFam U-box domain-containing protein 4 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01436 Pste-Chr8 7855303 7859516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01436 15 292 U-box Gene Family AT2G23140 32.857 2.00e-36 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01436 8 7855303 7859516 Pste8g01436 8 7855303 7859516 ECH
Pste7g02032 7 18669234 18673257 Pste8g01436 8 7855303 7859516 PCT