LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g01435	CAATGGCCATCAAAGACATCCAGGAAGATGAAGTGTCAAGTATGGAAGATGGTGTTTACCCTAGCCCTTCCAGAAACTCTGGCATGTTACATCACTGTTGTTCAAACCATGTTGTAACCCTGTTGCAGAAGGTTATTGCAGAAGTCATTGGCACATATTTTGTGGTATTTGCTGGTTGTGGCTCTGTGGCAGTGAATAAAATCTATGGTTCAGTCACATTTCCTGGTGTTTGTGTCACATGGGGGCTGATTGTAATGGTCATGATTTACTCTCTTAGTCATATCTCTGGAGCTCACTTTAATCCTGCAGTCACCATCACTTTGGCTATATTTCGCCGCTTCTCATTAAAACAGATGCCACTTTACATTTTTGGTCAGTTGCTGGGGTCGATACTTGCTAGTGGCACATTAGCACTAATGTTCGATGTGACGCCTAAAGCTTACTTTGGAACGGTACCAGTTGGATCCAATGTCCAGTCTTTAATTGCTGAAATCATCATCACCTTTCTCTTGATGTTTGTTATATCTGCCGTTGCTACAGATGACAGAGCGGTGGGTGACTTTGCAGGAGTTGCAGTTGGAATGACTATAATGTTGAATGTTTTCGTTGCTGGGCCTGTATCAGGAGCTTCCATGAACCCTGCAAGAAGTATTGGTCCGGCACTTATCAAACATGTTTACAAAGGGTTATGGGTATACGTAGTTGGACCAATTATTGGAGCCATAGCTGGAGCACTTGCGTATGACTTCCTTAGATCCACAGAACTTGAGAATAGATCATCACTTGAAGAGCAG	794	0.4307	MAIKDIQEDEVSSMEDGVYPSPSRNSGMLHHCCSNHVVTLLQKVIAEVIGTYFVVFAGCGSVAVNKIYGSVTFPGVCVTWGLIVMVMIYSLSHISGAHFNPAVTITLAIFRRFSLKQMPLYIFGQLLGSILASGTLALMFDVTPKAYFGTVPVGSNVQSLIAEIIITFLLMFVISAVATDDRAVGDFAGVAVGMTIMLNVFVAGPVSGASMNPARSIGPALIKHVYKGLWVYVVGPIIGAIAGALAYDFLRSTELENRSSLEEQ	264

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g01435	264	NCBIfam	MIP family channel protein	46	247	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste8g01435	264	Pfam	Major intrinsic protein	38	247	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste8g01435	264	ProSitePatterns	MIP family signature.	98	106	IPR022357	-
	Pste8g01435	264	PRINTS	Major intrinsic protein family signature	117	136	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste8g01435	264	PRINTS	Major intrinsic protein family signature	193	215	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste8g01435	264	PRINTS	Major intrinsic protein family signature	230	250	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste8g01435	264	PRINTS	Major intrinsic protein family signature	80	104	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste8g01435	264	PRINTS	Major intrinsic protein family signature	162	180	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste8g01435	264	PRINTS	Major intrinsic protein family signature	42	61	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pste8g01435	264	SUPERFAMILY	Aquaporin-like	36	256	IPR023271	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g01435	Pste-Chr8	7849223	7851115	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g01435	4	259	Major Intrinsic Protein MIP	AT5G37820	62.016	1.32e-113	327

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