Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01435 CAATGGCCATCAAAGACATCCAGGAAGATGAAGTGTCAAGTATGGAAGATGGTGTTTACCCTAGCCCTTCCAGAAACTCTGGCATGTTACATCACTGTTGTTCAAACCATGTTGTAACCCTGTTGCAGAAGGTTATTGCAGAAGTCATTGGCACATATTTTGTGGTATTTGCTGGTTGTGGCTCTGTGGCAGTGAATAAAATCTATGGTTCAGTCACATTTCCTGGTGTTTGTGTCACATGGGGGCTGATTGTAATGGTCATGATTTACTCTCTTAGTCATATCTCTGGAGCTCACTTTAATCCTGCAGTCACCATCACTTTGGCTATATTTCGCCGCTTCTCATTAAAACAGATGCCACTTTACATTTTTGGTCAGTTGCTGGGGTCGATACTTGCTAGTGGCACATTAGCACTAATGTTCGATGTGACGCCTAAAGCTTACTTTGGAACGGTACCAGTTGGATCCAATGTCCAGTCTTTAATTGCTGAAATCATCATCACCTTTCTCTTGATGTTTGTTATATCTGCCGTTGCTACAGATGACAGAGCGGTGGGTGACTTTGCAGGAGTTGCAGTTGGAATGACTATAATGTTGAATGTTTTCGTTGCTGGGCCTGTATCAGGAGCTTCCATGAACCCTGCAAGAAGTATTGGTCCGGCACTTATCAAACATGTTTACAAAGGGTTATGGGTATACGTAGTTGGACCAATTATTGGAGCCATAGCTGGAGCACTTGCGTATGACTTCCTTAGATCCACAGAACTTGAGAATAGATCATCACTTGAAGAGCAG 794 0.4307 MAIKDIQEDEVSSMEDGVYPSPSRNSGMLHHCCSNHVVTLLQKVIAEVIGTYFVVFAGCGSVAVNKIYGSVTFPGVCVTWGLIVMVMIYSLSHISGAHFNPAVTITLAIFRRFSLKQMPLYIFGQLLGSILASGTLALMFDVTPKAYFGTVPVGSNVQSLIAEIIITFLLMFVISAVATDDRAVGDFAGVAVGMTIMLNVFVAGPVSGASMNPARSIGPALIKHVYKGLWVYVVGPIIGAIAGALAYDFLRSTELENRSSLEEQ 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01435 264 NCBIfam MIP family channel protein 46 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 Pfam Major intrinsic protein 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Pste8g01435 264 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 PRINTS Major intrinsic protein family signature 42 61 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 SUPERFAMILY Aquaporin-like 36 256 IPR023271 -
Pste8g01435 264 CDD MIP 42 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste8g01435 264 PANTHER AQUAPORIN NIP2-1 23 255 IPR034294 -
Pste8g01435 264 Gene3D Glycerol uptake facilitator protein. 4 264 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01435 Pste-Chr8 7849223 7851115 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01435 4 259 Major Intrinsic Protein MIP AT5G37820 62.016 1.32e-113 327