Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01409 CTTTGGAAAACATGCAATGCAAACCCAAAAATGGAGAATCTCCCACCTGGGTTTCGATTCTACCCAACAGAAGAAGAGTTAGTTGGGTTCTATCTACATAACCAGCTCCAACTCCAAGGGCAGAGACACGACACCACCAGAGTGATTCCAGTGATTGACATCAATGGCGTGGACCCATGGAACCTGCCATCACTGGCAGGGGAGGTGTGTCGGAGAGACATGGAGCAATGGTTTTTCTTTTGGCCCAGACAAGAGAGAAGCAGGCCCAACAGAACTACTGCAAGTGGGTACTGGAAGGCCACTGGTTCTCCCGTCCACGTTTACTCTTCTCACACCAAAGTCATTGGGATGAAGAAAACCATGGTCTTTTACAAAGGAAAAGCTCCTACTGGAAGGAAAACCAAGTGGAAGATGCACGAGTACAAAGCCATTCTAAACTCTCACCCTCCAAAGTTGAAGCACGAATTCAGCTTGTGTCGTGTTTATGTCATGTCGGGAAGCTTTTGCTCCTTTGATCGACATCCACTTGATATACCAAGAGTTGAGGGAGACATAGGTGGTGCTTCAACAAGTTCTCAACCCCATAAACCTACTAACACTTCTTAAATCATCGTTTACATTAATCATCTACCTCGCTTCACCTCCAAGTGTTATAATCTTTACTATTTCTTATTCAGCATAGGATTGTTTTTCCAACGGAAAATAAGTTCCAATCACCATATTCAGGAAAGAGGCGTGGATCTTATCACTTTGCTTTGTTAATTGTCTTGTAACCATAATCGATGTTTCACCCCTTCAAACTTTCTTTCTTATTTAGGACTTCAAAACAAATTACTTCGCCTACATCATACCTGTTAAACTCCAATGTTATACCCGTTTATTTCCAACTTGTTTAAATGTAG 902 0.4246 LWKTCNANPKMENLPPGFRFYPTEEELVGFYLHNQLQLQGQRHDTTRVIPVIDINGVDPWNLPSLAGEVCRRDMEQWFFFWPRQERSRPNRTTASGYWKATGSPVHVYSSHTKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKAILNSHPPKLKHEFSLCRVYVMSGSFCSFDRHPLDIPRVEGDIGGASTSSQPHKPTNTS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01409 201 MobiDBLite consensus disorder prediction 182 201 - -
Pste8g01409 201 MobiDBLite consensus disorder prediction 186 201 - -
Pste8g01409 201 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 164 - -
Pste8g01409 201 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Pste8g01409 201 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Pste8g01409 201 Pfam No apical meristem (NAM) protein 15 142 IPR003441 GO:0003677|GO:0006355
Pste8g01409 201 SUPERFAMILY NAC domain 4 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01409 Pste-Chr8 7677271 7678325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01409 17 201 NAC Transcription Factor Family AT5G22380 57.576 2.81e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste8g01409 NAM 1.4e-31 No_clan