Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01408 ATGGGACTCACTCTGAGATTAACAGAAGCCAAAATCCCAGGTGTGTACAGCGGTGGAGCGTGGGAGAGCGCACACGCGACGTTCTACGGGGGGAGCGACGCGTCCGGGACAATGGGGGGCGCGTGCGGGTACGGGAACCTGTACAGCCAGGGGTACGGCGTTAACACGGCGGCCCTGAGCACGGCGCTGTTCAATAACGGGTTCAGCTGCGGGGCCTGCTTCGAGATAAAGTGCGCCAATGACCCCAGCTGGTGCCACCCCGGCAGCCCCTCCATATTGGTAACGGCCACCAACTTCTGCCCTCCCAACTACGCCCTCCCCAACGACAATGGAGGTTGGTGCAACCCTCCCAGGCCCCACTTCGACCTCGCCATGCCCATGTTTCTCCACATTGCTCAATACCGCGCCGGCATCGTCCCCGTTTCTTACCGCAGGGTGCCTTGCCGGAAGCAGGGTGGGATGAGGTTCACCATAAACGGCTTCCGTTACTTCAACTTGGTACTGATCACCAACGTGGCTGGTGCAGGGGATATCGTGCGGACGAGCATCAAAGGCTCACGGACTGCCTGGATTAACATGAGCCGTAACTGGGGTCAGAACTGGCAATCAAACTCTGTTCTCGTTGGTCAGTCACTCTCCTTCAGGGTCACAGCCAGTGACCGACGTACCTCCACTTCCTGGAACATTGTACCCGCCACTTGGCAATTTGGTCAAACATTTACCGGCAAAAATTTCAGGATCTAA 744 0.5793 MGLTLRLTEAKIPGVYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCANDPSWCHPGSPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLHIAQYRAGIVPVSYRRVPCRKQGGMRFTINGFRYFNLVLITNVAGAGDIVRTSIKGSRTAWINMSRNWGQNWQSNSVLVGQSLSFRVTASDRRTSTSWNIVPATWQFGQTFTGKNFRI 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01408 247 SUPERFAMILY Barwin-like endoglucanases 20 171 IPR036908 -
Pste8g01408 247 PANTHER EXPANSIN-A15 17 245 IPR002963 GO:0009664
Pste8g01408 247 SUPERFAMILY PHL pollen allergen 150 242 IPR036749 -
Pste8g01408 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Pste8g01408 247 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Pste8g01408 247 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Pste8g01408 247 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Pste8g01408 247 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Pste8g01408 247 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576
Pste8g01408 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 163 242 IPR007117 -
Pste8g01408 247 FunFam Expansin 153 245 - -
Pste8g01408 247 CDD DPBB_EXPA_N 21 148 - -
Pste8g01408 247 Gene3D - 154 245 IPR036749 -
Pste8g01408 247 PRINTS Expansin signature 128 141 IPR002963 GO:0009664
Pste8g01408 247 PRINTS Expansin signature 164 185 IPR002963 GO:0009664
Pste8g01408 247 PRINTS Expansin signature 51 65 IPR002963 GO:0009664
Pste8g01408 247 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Pste8g01408 247 PRINTS Expansin signature 152 164 IPR002963 GO:0009664
Pste8g01408 247 PRINTS Expansin signature 111 128 IPR002963 GO:0009664
Pste8g01408 247 PRINTS Expansin signature 78 89 IPR002963 GO:0009664
Pste8g01408 247 PRINTS Expansin signature 92 102 IPR002963 GO:0009664
Pste8g01408 247 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Pste8g01408 247 FunFam Expansin 10 149 - -
Pste8g01408 247 SMART dpbb_1 56 143 IPR007112 -
Pste8g01408 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 153 IPR007112 -
Pste8g01408 247 Pfam Expansin C-terminal domain 154 231 IPR007117 -
Pste8g01408 247 Gene3D - 7 149 IPR036908 -
Pste8g01408 247 Pfam Lytic transglycolase 56 143 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01408 Pste-Chr8 7673495 7674238 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01408 3 247 Expansin Gene Family AT2G39700 84.082 4.75e-161 444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01408 8 7673495 7674238 Pste8g01408 8 7673495 7674238 ECH
Pste5g02338 5 15872509 15875995 Pste8g01408 8 7673495 7674238 ECH
Pste8g01408 8 7673495 7674238 Pste8g01408 8 7673495 7674238 PCT