Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01388 ATGTCTTCCCATCAATATTGGTGCTACCGGTGCAACAAATTGGTCACAGTATGGCAGCAACAAGAATTGCCAATATGTCCCGATTGCGACAGCGGCTTCCTCGAAGAGATCGAACCTTCCAACCGCTCCGTCCACGTCGAAACCCGCCGCCGTAGATTCCCAACGGCGGCGGCCATGTACATGATCGGCCAGCGTTCCGTTAACTCTGACCACAACCGTCGTTCCTCCCACCGTCACCATTGTCAAAGCATCGTCGGCGATCGGTCATCGCTCAACCCGGTCATCATGCTCCGTGGCGAGGGTACAAGCCGTGACCGAGTCTCTTCCGGCTTCGACCTTTTCTTCGACGACGGTGCCGGCTCTGGTCTTCGACCGCTTCCTCCGAGGATGTCGGAGTTTCTCCTCGGAACAGGCTTCGACCGAGTCATGGAAAACCTTTCCCACGTGGAATCCAACTCCGGTGGTGGGAATCACAACAATCAAAACAACGCGCCGGCGTCAAAATCGGCGGTGGATTCCCTACCGGAGATTGAGATCAACGCAAGCCACATGGCGATTGAGTCACACTGCGGGGTTTGTAAGGAGCCTTTCGAACTGAGCACGATGGCAAAGGAAATGCCATGCAAACACATATACCACTCAGAATGCATCTTACCGTGGCTGGCGATTCGAAACTCGTGCCCTGTGTGTCGGCACGAGTTGCCATGCGAGAATGCACGTGCGAGGTTGGAGCGTGTGGAGGAAGAGGAACAGAACAACATGGGATTGACGATTTGGCGGTTACCGGGTGGAGGGTTTGCGGTGGGGAGGTTGGGGAGAAGAGAGGGTGAGAGGGAGGTTAATGTTCCTCTTGTGTACACGGAAGTGGATGGTGGGTTTAACTTTAACAACGTTGTTATGGGTGAACCCAGGAGAGTTTCTTGGTCTGTTTCGGAGTCTAGAGGGAGGGGAAGAGGTGGTGCTTTTAGGAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGTGTGGGGCCTCACCGTTCTTCTGCTTCAACACCCATCAGGAGTACTAGTGTTAGGGCTCCTCCTAACTTAGGTCCTTCTCCTCCCAATTCTCGTAGGACTTGGTCTATGGATGTCAATAACGGTGGAACCAGACCTTGGTAA 1152 0.5356 MSSHQYWCYRCNKLVTVWQQQELPICPDCDSGFLEEIEPSNRSVHVETRRRRFPTAAAMYMIGQRSVNSDHNRRSSHRHHCQSIVGDRSSLNPVIMLRGEGTSRDRVSSGFDLFFDDGAGSGLRPLPPRMSEFLLGTGFDRVMENLSHVESNSGGGNHNNQNNAPASKSAVDSLPEIEINASHMAIESHCGVCKEPFELSTMAKEMPCKHIYHSECILPWLAIRNSCPVCRHELPCENARARLERVEEEEQNNMGLTIWRLPGGGFAVGRLGRREGEREVNVPLVYTEVDGGFNFNNVVMGEPRRVSWSVSESRGRGRGGAFRRMFNGLFSCLRGGGVGPHRSSASTPIRSTSVRAPPNLGPSPPNSRRTWSMDVNNGGTRPW 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01388 383 SMART ring_2 190 230 IPR001841 -
Pste8g01388 383 CDD RING-H2_RNF181 190 234 - -
Pste8g01388 383 SUPERFAMILY RING/U-box 171 235 - -
Pste8g01388 383 FunFam E3 ubiquitin-protein ligase RING1-like 153 237 - -
Pste8g01388 383 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Pste8g01388 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 235 - -
Pste8g01388 383 MobiDBLite consensus disorder prediction 148 171 - -
Pste8g01388 383 MobiDBLite consensus disorder prediction 337 383 - -
Pste8g01388 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 237 IPR013083 -
Pste8g01388 383 Pfam Ring finger domain 189 231 IPR001841 -
Pste8g01388 383 Pfam zinc-ribbon 5 37 IPR039525 GO:0061630
Pste8g01388 383 MobiDBLite consensus disorder prediction 148 169 - -
Pste8g01388 383 Pfam Protein of unknown function (DUF1117) 254 346 IPR010543 -
Pste8g01388 383 MobiDBLite consensus disorder prediction 365 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01388 Pste-Chr8 7513498 7514649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01388 165 245 C3H Transcription Factor Family AT5G15820 47.561 1.26e-22 95.9