Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01370 ATGATCATGGAGGGATCTCACTCTCAGTACTGGATGTATGTGAAGAGAGAACAAATCCTGAAGTCACACTCACACCTTGAAGCACCAATTGGAGATGCTGAAAACAACAACAGCAACAGTTACTCGTGGGAAGAAAGGGCTTTTGCAGAAGACACAGCTAGGATACTTGGTGGGAGCATGTGGCCTCCAAAATCCTACTCTTGCACCTTTTGTAAAAGAGAGTTCAGGTCTGCTCAAGCTCTTGGAGGTCACATGAATATCCACAGGAGGGACAGGGCCAGGCTCAAACAATATCACAATTATGAACCCCTTCATCATCATCACAAAAATGATTTCATCAAATCCTTTTTAGGTAATCATCATTTTTCTGCACCTGATATTTCCACCCAGATAGAGTGTGGTCTTAGTGCTTCTTATTCTAGCCCTGCAACTAAAATTACAACAACCAAATTCTCATCTATATCCACACAAGAAAATTGTGGTCAGCATAAATTTTCACCTTATTCTTCTTCTTCTTCAATTATCTTGGGACAAATGGGGTCTCCTAATTCAGAACAAGAAGGGGTAGTCAAAGCAAGGGAGTACAATTTTAATGGAATGGGTTGTTGTAATTATGTTGAAACAAATTTGTCTGTGGGACTGACATCCACGTCGGGCCAAAAATCATCTCCAACAGTTCCTTGTGGGGACAGAGCCAAGATAGGTCCTAAGAGATTAAAGACTAGCATTTCTTCTCTGCCTCTCTTCCTCAAGCCATGTTCAAATGATCAAAGTTTGGCTTTTCAACCTACGGAAATCCCACTTGGACTTAATCATGGAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAACAACACAAAGTTAAGTAG 873 0.4124 MIMEGSHSQYWMYVKREQILKSHSHLEAPIGDAENNNSNSYSWEERAFAEDTARILGGSMWPPKSYSCTFCKREFRSAQALGGHMNIHRRDRARLKQYHNYEPLHHHHKNDFIKSFLGNHHFSAPDISTQIECGLSASYSSPATKITTTKFSSISTQENCGQHKFSPYSSSSSIILGQMGSPNSEQEGVVKAREYNFNGMGCCNYVETNLSVGLTSTSGQKSSPTVPCGDRAKIGPKRLKTSISSLPLFLKPCSNDQSLAFQPTEIPLGLNHGMEDLDLELRLGKQHKVK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01370 290 SMART c2h2final6 66 88 IPR013087 -
Pste8g01370 290 Gene3D Classic Zinc Finger 60 116 - -
Pste8g01370 290 SUPERFAMILY beta-beta-alpha zinc fingers 63 93 IPR036236 -
Pste8g01370 290 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pste8g01370 290 Pfam C2H2-type zinc finger 66 89 - -
Pste8g01370 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 93 IPR013087 -
Pste8g01370 290 PANTHER OS07G0101800 PROTEIN 37 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01370 Pste-Chr8 7376652 7377524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01370 42 97 C2H2 Transcription Factor Family AT2G37740 76.786 1.48e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste8g01370 zf-C2H2_6 1.8e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01370 8 7376652 7377524 Pste8g01370 8 7376652 7377524 ECH
Pste7g02086 7 19153378 19154239 Pste8g01370 8 7376652 7377524 PCT