Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01340 GCCACTTTTTGGGAGCATTGGCCAACCCACACGCTTCCTTTATTCTCCGTCTTCACAATGAAGATTGAGTGCGACGTCTGCAACAAACACGAGGCCTCCGTCTTCTGCACCGCCGATGAAGCGGCCCTCTGCGACGGATGCGACCACCGTGTCCACCATGCCAACAAACTGGCCTCCAAACACCAACGCTTCTCTCTTCTCCGCCCTTCCCCCAAGCAACACCCCCTCTGCGATGTTTGTCAGGAGAGAAGAGCCTTCACGTTCTGTCAGCAAGACCGAGCGATTCTCTGCAAAGAGTGTGACGTGTCCATTCACTCTGCGAACCAACACACTCTTAAGCATGATAGGTTCCTTCTCACAGGCGTGAAACTCTCTGCCTCTGCTCTGCTTCGTTCATCACACACTTCCTCTGCCTCTCATTCAAACTCTTCCACCATCAACAACAACCTTGCTCTTTCTGTTCAAGGAACTGCTTCTGATTCCACTTCCCCTTCCACAACTGCTAGCACCATATCAGACTATTTTACTCAAACTCTTCCCGGTTGGCTGCTTGAAGACTTTCCCGATTCATTTTCTGTTCCCTTTGCTTTCTCCAAGAGCGATGAAATGTTGCCACGGTTTGATGCTGAGGTGGAGGGGGATCTGGGTTCGTTCTCCACCGAGAACATGGGGATCTGGGTTCCTCAAGCACCGCCACCTCTTTTTTCTTCTTCACAGATGGATGGGGTGATTGCTCAAAGTGATAGCAACATCAAAGGTAGCAAATCGAGGTTGAAGGATGACAATTTCACTGTTCCACAGATTAGTCCTTCATCCAATTCCAAGAGAGCTAGATTTTCTATGGTAGAAACAAACAAACAAGGCTCAGTTTCCAATCTCGTGAGCCAGAATTGGCAACCCTCTTACCCTGCCTTGTAACTTACTCGCCCGTGTTTTCGATTTGGTTCCTTTTGACTTTTTTCTTTTTCTTTTCGTCTTCCCTACCGGGCTGTGCTTTGAAGTTTTGATGAATTTGAGCACCTTTCTACATGTGATTGTAAATATAAACCTTTTCAAATGCATTTTGTTTTTGACACATTTT 1081 0.4727 ATFWEHWPTHTLPLFSVFTMKIECDVCNKHEASVFCTADEAALCDGCDHRVHHANKLASKHQRFSLLRPSPKQHPLCDVCQERRAFTFCQQDRAILCKECDVSIHSANQHTLKHDRFLLTGVKLSASALLRSSHTSSASHSNSSTINNNLALSVQGTASDSTSPSTTASTISDYFTQTLPGWLLEDFPDSFSVPFAFSKSDEMLPRFDAEVEGDLGSFSTENMGIWVPQAPPPLFSSSQMDGVIAQSDSNIKGSKSRLKDDNFTVPQISPSSNSKRARFSMVETNKQGSVSNLVSQNWQPSYPAL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01340 305 FunFam B-box zinc finger protein 21 20 117 - -
Pste8g01340 305 Pfam B-box zinc finger 73 113 IPR000315 GO:0008270
Pste8g01340 305 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
Pste8g01340 305 PANTHER B-BOX ZINC FINGER PROTEIN 22 20 274 - -
Pste8g01340 305 CDD Bbox1_BBX-like 24 66 - -
Pste8g01340 305 ProSiteProfiles Zinc finger B-box type profile. 72 119 IPR000315 GO:0008270
Pste8g01340 305 CDD Bbox1_BBX-like 76 119 - -
Pste8g01340 305 Gene3D Classic Zinc Finger 20 114 - -
Pste8g01340 305 MobiDBLite consensus disorder prediction 254 277 - -
Pste8g01340 305 MobiDBLite consensus disorder prediction 260 277 - -
Pste8g01340 305 SMART bboxneu5 72 119 IPR000315 GO:0008270
Pste8g01340 305 SMART bboxneu5 19 66 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01340 Pste-Chr8 7198712 7200145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01340 20 279 C2C2-CO-like Transcription Factor Family AT1G75540 43.465 1.24e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pste8g01340 zf-B_box 5.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01340 8 7198712 7200145 Pste2g00754 2 7911075 7912302 PCT