Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01335 GGGATTATATTTCTCCTCGTTCTGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAGAGGTGGGTCCAATAGAGGAAGGGGTGGTCGTCATCTGCATGAGCCAGCAGAAGAAAGCATAGTCTGGGGTGCCCCATCAAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATCTAGGCCATGCAATGGCACTTTCTTTAGCCGAAGATTTGAAGAGACCAAACGCCCATCGAGGATATAGTAGGGGAGAAGACACTGGTGATGATTACTCAAAAGCACCTGCACAACCTCCATTTGCCCCTACACCATTTTATCCCCACGAATATAGTTTGTCATTAAACAGAAGAATATGTGGTGGCTGCAACCAGGAGATAATGTACGGAAATTGTTTGGGCTGCTTGGATACTTATTTTCATCCAAATTGCTTTCGCTGCCACTCTTGTCGTTACCCCATTACAGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCCTGCTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATTATACAGCTCGTTGCTGTAGTTGTGAAAGATTGGAGCCTCTTAACATAAAATACTACGGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCTATAATGGACACTGGTGATTGCCAACCTCTGTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGGATAGATCAACAAATTCCCATGCTTCTAGTTGCAAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAGAATGTAAGGAATACTACCTTCTATGTTTTAGTGAAATATTTAGTCCAATTCCTCTTACTCAGTGGTTTCTGCCAGGGTTTTCATCACTTACCAGAAACTAGGGGCTTATGCCTTTCAGAAGAGCAGACTGTCACCAGTGTACATAGAAGGCCAAGAATTGGAGGCCATAGACTAATGGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACTGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTCACAGGTGCTATACTTGCCCATGAGTTGATGCATGCTTGGCTACGTCTTAATGGTAGTATATATTTATATTTTGATTCCTTTGGTATTCAACTTCCTAGTATCCATGACCTGTCATCTCATTCATTCACTTTGAACAAAGCAGGTTATCGCAACCTTAATCCTGAAGTAGAGGAAGGCATTTGTCAGGTGCTTTCGTATATGTGGCTTGAGTCAGAAGTAATGCCTAGCTTTCAAAGCATGCCATCGACATCCACCGGTGCTTCTTCTTCCTCCTCCTCCTCAAAGAAGGGTGCAACGTCTCAGGTTGAAAATAAATTGGGTGAATTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAATAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTCACTGGCATTTTTCCATGGATGGGACCAGGATCGACTCAAAGTAAAGACACAAACTTGGACAACTTCAGCTATTTGGGTCCCATGAGGATGTTCAAGTCTAATTTGACTAAAAGAAAA 1718 0.4191 MKWLSKLFRGGSNRGRGGRHLHEPAEESIVWGAPSRALDDRARAQKEKEDLGHAMALSLAEDLKRPNAHRGYSRGEDTGDDYSKAPAQPPFAPTPFYPHEYSLSLNRRICGGCNQEIMYGNCLGCLDTYFHPNCFRCHSCRYPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDYTARCCSCERLEPLNIKYYGLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVAREALNEAIVGEKNVRNTTFYVLVKYLVQFLLLSGFCQGFHHLPETRGLCLSEEQTVTSVHRRPRIGGHRLMGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLNGSIYLYFDSFGIQLPSIHDLSSHSFTLNKAGYRNLNPEVEEGICQVLSYMWLESEVMPSFQSMPSTSTGASSSSSSSKKGATSQVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHFTGIFPWMGPGSTQSKDTNLDNFSYLGPMRMFKSNLTKRK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01335 559 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 135 - -
Pste8g01335 559 Pfam Protein DA1 311 393 IPR022087 -
Pste8g01335 559 Pfam Protein DA1 417 520 IPR022087 -
Pste8g01335 559 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Pste8g01335 559 Pfam LIM domain 110 163 IPR001781 -
Pste8g01335 559 PANTHER PROTEIN DA1-RELATED 2 3 392 IPR045218 -
Pste8g01335 559 CDD LIM_DA1 110 162 - -
Pste8g01335 559 MobiDBLite consensus disorder prediction 66 85 - -
Pste8g01335 559 MobiDBLite consensus disorder prediction 452 471 - -
Pste8g01335 559 FunFam Protein DA1-related 2 97 163 - -
Pste8g01335 559 Gene3D Cysteine Rich Protein 105 169 - -
Pste8g01335 559 ProSitePatterns LIM zinc-binding domain signature. 110 144 IPR001781 -
Pste8g01335 559 MobiDBLite consensus disorder prediction 66 81 - -
Pste8g01335 559 SMART lim_4 109 161 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01335 Pste-Chr8 7157248 7161095 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pste8g01335 DA1-like 7.6e-39 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01335 8 7157248 7161095 Pste8g01335 8 7157248 7161095 ECH
Pste7g02124 7 19456705 19461259 Pste8g01335 8 7157248 7161095 PCT