Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01312 TGCTGTTTCTCTGATATCATCTTTTTCGATCCATTTTTCTCTCTCTCTCAAAGGTCCTGTGTCAGGGACTCAGAAGAGAGAGATCACAATATCACACATAGTCATACCTTCCACAATTCACACAACTTGTGCTGCGGTTCAGAAAGACCGAAACTTTCTCCTTAAAAACTTGGTGGGTATTAATGATCTTTTTGTCTCGCTGAGTCATTACATGAAGATTCTCAACTTGGCTGTTCAAAATGTTGGTTACTGAGGATAAGTCTCATGTTGTTGTTGACATAGACAATAATGGCTGTTGTCACCGGAGCTCTGCTGGCGTCGAGGGGTGTTCCGAGGCCGGCGACCGGTCTTATGAGGAGCAAAGGTCCTCCAATGATTCTGGAACTGAGATTGTGGGAGTGTGTGAGAAGGAGAGAGGATCCTCTGCATCAGAGTGTTCAGTGGAGGTGGATCTGGAGGAGGGTGCTGTCCCTGAGGTCAAGGTGCATTTGGCCAATGTGGAGAGGGATTGTAGGATTTGCCATCTCAGCATGGATATGACCAACCATGAATCTGGGACTGCCATTGAGCTCGGATGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGAAACAAAACTTGTGAAATCTGTGGATCAATTGCTCGGAATGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAGTGGAGTGAGGCAAATGAGGGTTCCACGGTAGCACCAACTGGAGCAGCACCAGCAGCAGAAAGTAGAAATTTTTGGCAGGGCCACCGTTTTTTGAATTTCCTGCTAGCCTGTATGGTGTTTGCGTTTGTCATATCCTGGCTTTTCCACTTTAATGTGCCCTCTTGAATTCCTGTAACCTTGAGGATGAAGCAGGTTGAGATGATGGAGGGTTATGATCTTAACACAGGTATCAAATTCAATACCTGTGTCTGCATACTTCATTCGGATCTCTGTCTTTCTTTCCATGTCATGTTCATATCTCTATTTTTATTTTTATATCTTGTATTATTCATCTTATTTTCCTCAACTTAGAGTACAACCATGGATGTTTATCTCTATTTTCTTAATATTTTGTATTATTTGACAAGTTTCATTTCTCATTTAGAAATTATAAG 1153 0.4258 MLVTEDKSHVVVDIDNNGCCHRSSAGVEGCSEAGDRSYEEQRSSNDSGTEIVGVCEKERGSSASECSVEVDLEEGAVPEVKVHLANVERDCRICHLSMDMTNHESGTAIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWSEANEGSTVAPTGAAPAAESRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01312 214 MobiDBLite consensus disorder prediction 26 49 - -
Pste8g01312 214 Pfam RING-variant domain 91 142 IPR011016 GO:0008270
Pste8g01312 214 ProSiteProfiles Zinc finger RING-CH-type profile. 83 149 IPR011016 GO:0008270
Pste8g01312 214 SMART ringv_2 90 143 IPR011016 GO:0008270
Pste8g01312 214 SUPERFAMILY RING/U-box 88 145 - -
Pste8g01312 214 PANTHER ZINC FINGER, RING-CH-TYPE 17 213 - -
Pste8g01312 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 151 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01312 Pste-Chr8 6979462 6983955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01312 35 214 C3H Transcription Factor Family AT5G05830 62.983 2.70e-74 221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02189 5 14445617 14448635 Pste8g01312 8 6979462 6983955 ECH
Pste8g01312 8 6979462 6983955 Pste8g01312 8 6979462 6983955 ECH