LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g01283	ATGGCCTCATCCAGTGGAACCTCGAGCGTGTCCACTAAATTCACTCAGAGCTCTGGCTCTCACCAGGATTTGCAGCTTCTGATGGAACAGAGAAAAAACAAGAGAAAGCAATCCAATCGTGATTCAGCCAGAAGATCCCGGATGCGAAAGCAGCAACACTTGGATGATCTCATTGCACAAGTGGAACGCCTCAAAAGGGAAAATAGCTTAATCCTCACTAATGTCAACATCACCACACAACAATATCTCAATGTTGAGGCTCAAAATTCCATTCTCAGGGCCCGCAAGACTGAACTTGCCCAAAGCCTAAAATCACTCAATCATATCATCAACTCAACAACCACCATCGGGGTCTACCAAAGCGATTGCTACATCTCAAGTCAGGTCACCAGAGTGGCATGCTACTCGTCACTGTCCAATGTTTTGGAAAAATGGATGTCGGTGCAAGCGTAA	453	0.4592	MASSSGTSSVSTKFTQSSGSHQDLQLLMEQRKNKRKQSNRDSARRSRMRKQQHLDDLIAQVERLKRENSLILTNVNITTQQYLNVEAQNSILRARKTELAQSLKSLNHIINSTTTIGVYQSDCYISSQVTRVACYSSLSNVLEKWMSVQA	150

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g01283	150	CDD	bZIP_plant_GBF1	32	82	IPR045314	GO:0003700\|GO:0006355
	Pste8g01283	150	MobiDBLite	consensus disorder prediction	1	53	-	-
	Pste8g01283	150	MobiDBLite	consensus disorder prediction	1	26	-	-
	Pste8g01283	150	FunFam	BZIP transcription factor	29	81	-	-
	Pste8g01283	150	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	34	49	IPR004827	GO:0003700\|GO:0006355
	Pste8g01283	150	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	29	92	IPR004827	GO:0003700\|GO:0006355
	Pste8g01283	150	SMART	brlzneu	27	91	IPR004827	GO:0003700\|GO:0006355
	Pste8g01283	150	SUPERFAMILY	Leucine zipper domain	31	85	IPR046347	GO:0003700\|GO:0006355
	Pste8g01283	150	Pfam	bZIP transcription factor	30	72	IPR004827	GO:0003700\|GO:0006355
	Pste8g01283	150	Coils	Coil	47	74	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g01283	Pste-Chr8	6828400	6829204	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g01283	27	110	bZIP Transcription Factor Family	AT4G34590	66.667	1.43e-30	106

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Pste8g01283		bZIP_1	2.3e-08	CL0018

Showing 1 to 1 of 1 entries