Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01282 TACAGATGTAATATAATGCACTTGCTTTTATAGTTTGCTTGGTCACCAAGAAACGACAAAGGGAAACAGTTTCTACCTTTTCCTTGCTGATTCTAAATAATCTCTCTCTTTTCTCTATTGGATCATAGCTTTCTGCATCCTCTTTCGCTTAGGTTCTCAATTTTTCTCTCTTGTCGTCGACCTCAACTTTGTAGCCTCAGCTTACAAAACCTTATATTCTTTTTGGTTGGGGTGAGAGTTGCTATCTTATTCCTGCTTTCATCTGCAAGACACTAACATCTCTGTTCTTTTAGTTTCAGAATTCCTTATACGCACACACACACCAAATTTCTGGTACACCATGATTTTTCCAAGATTTTGTACGAATCTAAAAGGTATGGAATTGGAAAACCTCTACCGCCCTTGTTTTGTGCCATATTCAAATTGGTTTGTGCAAGAGAGCCACAGCACAGAATGGACTAGAGAAGATAATAAATTATTTGAAAGTGCCCTTGCTATATATGACAAGGACACCCCGGATAGATGGTTCAAGGTGGCAGCTATGATCCCTGGGAAGACTGTGTTTGATGTGGTCAAGCAGTATAGGGAATTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGTTATCTGGCCTCATCTTTCTCCTTTGAGCTGGCAGACAACCACAACTATGATGGATGCAGAAGAAGGCCTGTTCCTGTTAGAGGTTCTGATCAAGAGAGAAAGAAAGGAGTCCCCTGGACTGAAGAGGAGCACAGACGTTTTCTGCTGGGACTTTTAAAGTATGGTAAAGGAGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCCACCCAAGTTGCTAGCCATGCACAGAAGTACTACATAAGGCAAAAGGTTTCTGGAGGGAAAGATAAAAGGAGGCCTAGTATCCATGATATAACCACAGTTAACCTTACAGAAGCTTCTGCATCAGATAAGAACAAGCCCGAGTTATTTAAGAACAAGATGAATAGCATGTCAAAAGTACAGCTGGACTGGACTAGTCACTACAGTGATGGATCTCTCATGGTTTTCAACCCAAATAGTGATGACTTGTTTGTATCCTCTTCATCTGATATCACTTCCATGGCTCTGAAAATGCAAGGGCAAGATCTCTATGACTGTGCTTTACATGAGGCTTATGCCAAGGTAAAAGTTCCAGGGTTCAGAATAGCTCCTAGAGACTTCAATAATGAAGCTGTTTTTGGTATTCATGCACTGTAATGCCAACCCTGACGACGTTACAAAAAGAAAAAAAGAATCCACTGTGTAGATCAATGTCCTGTAGGATTAATGTAGATGACCTGAATCTAGCTAGCTACTTAGTTCATGGTTAGTGAACATCCTAAAGAAAACTACAATAATGTTTCAAATCCTTTAAACTAAATTTGGATGGACTTCTTTTGATGTTTTCCTCTTTATCTTTTTAGTTACAGTGATAATGTCTATTTCTTTGGAGACCCAATTGGAATCATATGATGTAACATTCAGGCATGCTATAACTATGTCTCAAAAGCTACATTACAAACATCACTAATAATTGAATTCTATTATCACAGACATATTAACATA 1618 0.3906 MIFPRFCTNLKGMELENLYRPCFVPYSNWFVQESHSTEWTREDNKLFESALAIYDKDTPDRWFKVAAMIPGKTVFDVVKQYRELEEDVSEIEAGRVPIPGYLASSFSFELADNHNYDGCRRRPVPVRGSDQERKKGVPWTEEEHRRFLLGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTEASASDKNKPELFKNKMNSMSKVQLDWTSHYSDGSLMVFNPNSDDLFVSSSSDITSMALKMQGQDLYDCALHEAYAKVKVPGFRIAPRDFNNEAVFGIHAL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01282 309 CDD SANT 38 84 IPR001005 -
Pste8g01282 309 Pfam Myb-like DNA-binding domain 138 182 IPR001005 -
Pste8g01282 309 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 32 243 IPR043363 -
Pste8g01282 309 Gene3D - 31 98 - -
Pste8g01282 309 ProSiteProfiles Myb-like domain profile. 131 183 IPR001005 -
Pste8g01282 309 SUPERFAMILY Homeodomain-like 37 91 IPR009057 -
Pste8g01282 309 FunFam Transcription factor SRM1 31 98 - -
Pste8g01282 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 134 186 IPR006447 GO:0003677
Pste8g01282 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 187 IPR017930 -
Pste8g01282 309 ProSiteProfiles SANT domain profile. 34 89 IPR017884 -
Pste8g01282 309 SUPERFAMILY Homeodomain-like 133 187 IPR009057 -
Pste8g01282 309 FunFam transcription factor MYB1R1 137 188 - -
Pste8g01282 309 CDD SANT 138 182 IPR001005 -
Pste8g01282 309 ProSiteProfiles SANT domain profile. 139 187 IPR017884 -
Pste8g01282 309 SMART sant 35 87 IPR001005 -
Pste8g01282 309 SMART sant 135 185 IPR001005 -
Pste8g01282 309 Gene3D - 137 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01282 Pste-Chr8 6824450 6826766 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste8g01282 Myb_DNA-binding 2.3e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01282 8 6824450 6826766 Pste8g01282 8 6824450 6826766 ECH
Pste5g02140 5 13963038 13965618 Pste8g01282 8 6824450 6826766 ECH
Pste8g01282 8 6824450 6826766 Pste5g02140 5 13963038 13965618 ECH
Pste8g01282 8 6824450 6826766 Pste8g01282 8 6824450 6826766 PCT