Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01265 ATGGAAGAGGGCATGTCAGGCTTTTGCATTAGATCAGGAAGTGTCCGTGGTAAAAGTGGGAACACTACAACCACTGGCACTAAGTGTGGGCGTTGGAATCCCACGACTGAACAGGTTAAACTTCTAACTGAACTATTCAGGTCAGGACTCCGCACCCCAAGCACTGATCAGATTCAAAAGATCTCCACTCAGCTAAGCTTTTATGGTAAGATAGAGAGCAAGAATGTCTTCTATTGGTTTCAGAACCATAAGGCTAGGGAAAGACAGAAGCGCCGTCTTGCTGAGATGTATCAAGTATCAGAACCAGATAGGGTGATTGAGACTCTTCAACTCTTCCCTTTAAACTCCTTCGGTGAATCTGAACCAGAGAAGCTGAGGTGGCATCAACCTCTCCCTATGAACCAGTTTGGTGCTGCTCGCGGTCTAACTGCATCTTCCACGTGTGCCTGCTGCAATGATCAAGAAGAGACTCTTGTCCACTGCTTCAGGGATTGCAATCTGGTTGTAGCATTCTGGCAAACACTTGGCGTTCACATTGAGCAATCCATCTCCAATCATGATTCCAAACAATTCACTTCCAAGCAGCGCTCTAGAGCATTTGGATCGCAAGAAGCAAAACAACTTTGA 627 0.4609 MEEGMSGFCIRSGSVRGKSGNTTTTGTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRLAEMYQVSEPDRVIETLQLFPLNSFGESEPEKLRWHQPLPMNQFGAARGLTASSTCACCNDQEETLVHCFRDCNLVVAFWQTLGVHIEQSISNHDSKQFTSKQRSRAFGSQEAKQL 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01265 208 SUPERFAMILY Homeodomain-like 24 94 IPR009057 -
Pste8g01265 208 ProSiteProfiles 'Homeobox' domain profile. 25 90 IPR001356 GO:0003677
Pste8g01265 208 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 17 96 IPR044555 GO:0003700|GO:0099402
Pste8g01265 208 Pfam zinc-binding in reverse transcriptase 127 172 IPR026960 -
Pste8g01265 208 CDD homeodomain 31 91 IPR001356 GO:0003677
Pste8g01265 208 Gene3D - 28 95 - -
Pste8g01265 208 SMART HOX_1 27 94 IPR001356 GO:0003677
Pste8g01265 208 MobiDBLite consensus disorder prediction 186 208 - -
Pste8g01265 208 Pfam Homeodomain 29 89 IPR001356 GO:0003677
Pste8g01265 208 Coils Coil 203 208 - -
Pste8g01265 208 FunFam WUSCHEL-related homeobox 11 28 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01265 Pste-Chr8 6698082 6700114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01265 8 120 Wox Gene Family AT3G11260 62.121 3.92e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pste8g01265 Homeodomain 7.9e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02168 7 19958559 19959183 Pste8g01265 8 6698082 6700114 ECH
Pste8g01265 8 6698082 6700114 Pste8g01265 8 6698082 6700114 ECH
Pste7g02168 7 19958559 19959183 Pste8g01265 8 6698082 6700114 PCT