Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01263 ATTTTACACAACTGTGAAACACATACGGTTACGTTGGTGAATGGAAGCTATGGCGGCGAAGGAGCGCACAGTGTTGCAGTTCTCTTCTTCGCAAAGCTTGTCAGCGAAGGTTCACCCTCTCGTTGTCTTCAACATCTGCGATTGCTATGTTCGACGTCCTGATCAAGCGGAGCGCGTCATCGGAACGCTCCTCGGCTCCGTTCTGCCCGACGGAACAGTCGATGTTCGCAATTCCTACGCCGTTCCACACAGCGAGTCCGTTGACCAGGTTGCTTTGGATATTGAGTATCACCATAGTATGTTATTATCTCATCAGAAGGTGAACCCCAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTACCCAATCCTATTCATTTGACTATTGATACAGGATTCACAAAGGGTGCGGGTACCATAAAAGCATATGTTTCAAACAATTTATCTCTTGGAGATCGTCAAATTGCTGCACAATTTCAAGAAATTCCTTTAGATCTTCGCATGGTTGAAGCTGAACGTATTGGATTTGATACTCTGAAGGCAACTGCTGTTGAGAAAATCCCCTCTGATTTAGAAGGGATGGAAGCATCAATGGGACATCTATTAGCCTTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGGCGTGTTGATCCAGACAACAAAATTGGGAGATTTATATCAGATGCTGTAGGTTCCCTTCCCAAATTGCCCTCATCAGCTTTTGAGAAGCTTGTGAATGACAGCTTGCAGGATCACTTACTGTTGCTATATTTATCAAGCATTACCAGGACACAGCTTGACTTGGCGGAAAAATTAAATACGGCTGCCCAGATTTTGTGATTCTGTTTCTCCCGCACCAAATGCGATTTTGTTTATGGAAGTTTACCTTCTGTGATTTTCCCCAAAAGCTTGGAATATCTGCATTTTATTTTATTTTATTGAGATAGTAAATGTGGGGATTAATATTGCACAAGCAATTAAGAGCGTG 1052 0.423 MEAMAAKERTVLQFSSSQSLSAKVHPLVVFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDVRNSYAVPHSESVDQVALDIEYHHSMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTIDTGFTKGAGTIKAYVSNNLSLGDRQIAAQFQEIPLDLRMVEAERIGFDTLKATAVEKIPSDLEGMEASMGHLLALIDDIYKYVDDVVEGRVDPDNKIGRFISDAVGSLPKLPSSAFEKLVNDSLQDHLLLLYLSSITRTQLDLAEKLNTAAQIL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01263 287 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 125 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pste8g01263 287 FunFam Eukaryotic translation initiation factor 3 subunit F 10 188 - -
Pste8g01263 287 Pfam Maintenance of mitochondrial structure and function 174 280 IPR024969 -
Pste8g01263 287 CDD MPN_eIF3f 23 280 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste8g01263 287 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 20 283 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste8g01263 287 Gene3D Cytidine Deaminase, domain 2 9 188 - -
Pste8g01263 287 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 284 - -
Pste8g01263 287 SMART pad1_6 21 152 IPR000555 GO:0005515|GO:0008233|GO:0008237
Pste8g01263 287 ProSiteProfiles MPN domain profile. 22 153 IPR037518 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01263 Pste-Chr8 6687321 6691242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01263 5 287 Eukaryotic Initiation Factors Gene Family AT2G39990 73.540 1.25e-153 429