Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01241 CTTGGAGTGAAAATTAGCCCAATATAATACAAGTCAGGCCCAAATAACTTGTGGGGGCCCAGTTAGTTGGAATTAGTGTGGTTAGTGAGATCTTGGAATTGGGAGTTGGAAGTTGGAAGTTGGAAGTTGGAAGGAGCAGGGGACGTATCTCCTATGGGTTCCTCTTACCGTGACCGCACGTCGGAGTTCCGGTTGCTGTCGGAGACTCTGAAGAAGACCGGAGGAGTGGGCACAGCGGGCGAGAATGCTCCTTCTACATCTCACGAGTCGTATTCGAGATCGGAGTTCAACCGAAAGGCCTCACGAATTGGGTTGGGGATCCACGAAACCTCGCAGAAGATCGCGAGGCTGGTGCAGCTGGCGAGGAAATCCTCCATGTTCAACGATCCTGCTGTGGAGATTCAGGAACTGACTGTTGTGATTAAGAACGAGATCACAGCGCTGAATTCAGCTCTCTCCGATTTGCAAACCATTCAGAACATGGACATGGCTGACGGCAATTACTCGCAGGACAGGATGGTGCATTCAACCGCGGTTTGTGATGACTTGAAGAGTAAACTCATGGGAGCCACCAAGCATCTTCAAGATGTCTTAACTGCTAGAACAGAGAATATCAAGGCTCATGAGAACAGGAAGCAGATATTTTCTAAGAATACAGCAAGAGAGAACCCTTTCCAGCATCAGCCAAAGCCAGCTACTGAGCCACCCCCTTGGTCTAATTCATTGAATGCATCTGAGAGTTTCCAACAAGAATCAGCATTGCCAATAAATGGAGCTCCTGTTGGCAATCAACTAAGACGAAGGTTGGCTGTGGACAACACTCCATCTCAGCAAATGGAATTGTCTATGGTACAGCAGGTTGTTCCTCGGCATGAAAACTATGCTCAAAGTCGGGCAACTGCTCTGCATAATGTGGAATCTACTATCACAGAACTTAGTGGGATTTTCTCACATTTGGCTACAATGGTTGCTCACCAAGGGGAACTTGCTATCAGGATTGATGACAATATGGATGAGTCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGACATCTCAACCAAATATCATCAAATAGGTGGCTTCTAATAAAGATATTTGCTATTCTGATCCTTTTCCTCATGATCTTCATAGTCTTTGTCGCTTAATATACTCACACATGCTAATCGTGGAAGTTTTTACTTCATGGCTTACTTGGATTTATCTTCGTTCTTCTGTGGAGGCAAAATACAAGAGCAGCAAAAAGTGCGGATGTATTCTATCTGCTTGTAAATAGAGTTGTGTTATCTGTAAACTTTTTAAATTCCTATATTCTTTAGTTTGGTTATCATTGTAGGGTTTATTACAATTTTCGTTGGCATGTAAGCCTCAAGTTAAGAAAAATTGAGTAAGAAATATACGAGTGTTTGCTAAATTGATATATAGATTCACAATTTTTTGTCTAAATCGAGGGAGTTTCTAAGAGGCAAAATAGGGGGAGAAAGAATATAACGTTTCCGTATGCTGTACTGGACAAGTTACCAAATTGATGGTATCATACGAGTAGTCCTTTGTTCATGTA 1568 0.4286 MGSSYRDRTSEFRLLSETLKKTGGVGTAGENAPSTSHESYSRSEFNRKASRIGLGIHETSQKIARLVQLARKSSMFNDPAVEIQELTVVIKNEITALNSALSDLQTIQNMDMADGNYSQDRMVHSTAVCDDLKSKLMGATKHLQDVLTARTENIKAHENRKQIFSKNTARENPFQHQPKPATEPPPWSNSLNASESFQQESALPINGAPVGNQLRRRLAVDNTPSQQMELSMVQQVVPRHENYAQSRATALHNVESTITELSGIFSHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRHLNQISSNRWLLIKIFAILILFLMIFIVFVA 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01241 333 SMART tSNARE_6 236 303 IPR000727 -
Pste8g01241 333 Gene3D - 38 296 - -
Pste8g01241 333 CDD SNARE_syntaxin5 244 329 - -
Pste8g01241 333 PANTHER SYNTAXIN 43 327 IPR045242 -
Pste8g01241 333 MobiDBLite consensus disorder prediction 22 44 - -
Pste8g01241 333 SUPERFAMILY t-snare proteins 41 296 IPR010989 GO:0016020|GO:0016192
Pste8g01241 333 ProSitePatterns Syntaxin / epimorphin family signature. 247 286 IPR006012 GO:0005484|GO:0006886|GO:0016020
Pste8g01241 333 Pfam SNARE domain 278 329 IPR000727 -
Pste8g01241 333 MobiDBLite consensus disorder prediction 157 198 - -
Pste8g01241 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 241 303 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01241 Pste-Chr8 6582341 6587196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01241 1 333 SNARE and Associated Proteins AT5G05760 65.774 2.03e-153 432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01241 8 6582341 6587196 Pste8g01241 8 6582341 6587196 ECH